RNA id: TU306273


Basic Information

Item Value
RNA id TU306273
length 343
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G269912
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4244199 ~ 4244541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGTTAGCGAAGCTAGCACCGCATGGCACACATTTCACGTTAAGAAATTATCTCTGTCCAACACGTAAAGCATCTTACAAACCTTTAAACACGACTGTATATAATCGCATATCATATTGAAACACATTTTTGAAAACTTTTACATCACTTGTTACCCTAAATTCCTTTTTCACATTACAATTCACAGTATTCGCAATCAAAATAACTAAATACACTTCTTATAACGAAATTTGTATTCACCAAGAAGAAGTATAAATCAGAAAACAAAAATAAAATTGTTTCTCCCGGAAAAGATGTTAATTATATCATATTGCGTCCGTCTCGTCACGTCCCGTTCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306269 lncRNA upstream 8866 4235055 ~ 4235333 (+) True G269908
TU306268 lncRNA upstream 9512 4233690 ~ 4234687 (+) True G269907
TU306190 lncRNA upstream 231722 4012248 ~ 4012477 (+) True G269833
TU306168 lncRNA upstream 267804 3976075 ~ 3976395 (+) True G269814
TU306165 lncRNA upstream 275558 3968428 ~ 3968641 (+) True G269811
TU306276 lncRNA downstream 10150 4254691 ~ 4254968 (+) True G269915
TU306278 lncRNA downstream 34527 4279068 ~ 4279371 (+) True G269917
TU306280 lncRNA downstream 39049 4283590 ~ 4283878 (+) True G269919
TU306313 lncRNA downstream 89379 4333920 ~ 4334177 (+) True G269948
TU306333 lncRNA downstream 104569 4349110 ~ 4349430 (+) True G269959
CI01000065_04183838_04222038.mRNA mRNA upstream 21732 4183838 ~ 4222467 (+) True CI01000065_04183838_04222038
CI01000065_04115052_04165049.mRNA mRNA upstream 78770 4112278 ~ 4165429 (+) True CI01000065_04115052_04165049
CI01000065_04081314_04103789.mRNA mRNA upstream 140238 4081314 ~ 4103961 (+) True CI01000065_04081314_04103789
CI01000065_04044257_04051771.mRNA mRNA upstream 191916 4044257 ~ 4052283 (+) True CI01000065_04044257_04051771
CI01000065_04008274_04010105.mRNA mRNA upstream 234005 4008274 ~ 4010194 (+) True CI01000065_04008274_04010105
CI01000065_04247989_04251347.mRNA mRNA downstream 1122 4245663 ~ 4251797 (+) True CI01000065_04247989_04251347
CI01000065_04277095_04282609.mRNA mRNA downstream 31467 4276008 ~ 4283199 (+) True CI01000065_04277095_04282609
CI01000065_04361047_04363753.mRNA mRNA downstream 116396 4360937 ~ 4363839 (+) True CI01000065_04361047_04363753
CI01000065_04520939_04539169.mRNA mRNA downstream 276307 4520848 ~ 4539261 (+) True CI01000065_04520939_04539169
CI01000065_04547859_04555579.mRNA mRNA downstream 303318 4547859 ~ 4555579 (+) True CI01000065_04547859_04555579
TU305478 other upstream 691075 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 781271 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 1605994 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 2004201 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 3161544 1082153 ~ 1082655 (+) True G267577

Expression Profile