Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU306389 |
| length | 1641 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G270001 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 4515754 ~ 4526214 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU306479 | lncRNA | upstream | 3146 | 4502213 ~ 4512608 (+) | True | G270062 |
| TU306384 | lncRNA | upstream | 10635 | 4500293 ~ 4505119 (+) | True | G269999 |
| TU306344 | lncRNA | upstream | 136252 | 4376057 ~ 4379502 (+) | False | G269967 |
| TU306347 | lncRNA | upstream | 136252 | 4376057 ~ 4379502 (+) | True | G269967 |
| TU306343 | lncRNA | upstream | 144560 | 4370806 ~ 4371194 (+) | False | G269966 |
| TU306507 | lncRNA | downstream | 183795 | 4710009 ~ 4714110 (+) | True | G270090 |
| TU306471 | lncRNA | downstream | 256655 | 4782869 ~ 4784552 (+) | True | G270054 |
| TU306515 | lncRNA | downstream | 298573 | 4824787 ~ 4825329 (+) | True | G270098 |
| TU306517 | lncRNA | downstream | 302446 | 4828660 ~ 4828880 (+) | True | G270100 |
| TU306435 | lncRNA | downstream | 342258 | 4868472 ~ 4870154 (+) | False | G270036 |
| CI01000065_04361047_04363753.mRNA | mRNA | upstream | 151915 | 4360937 ~ 4363839 (+) | True | CI01000065_04361047_04363753 |
| CI01000065_04277095_04282609.mRNA | mRNA | upstream | 232555 | 4276008 ~ 4283199 (+) | True | CI01000065_04277095_04282609 |
| CI01000065_04247989_04251347.mRNA | mRNA | upstream | 263957 | 4245663 ~ 4251797 (+) | True | CI01000065_04247989_04251347 |
| CI01000065_04183838_04222038.mRNA | mRNA | upstream | 293287 | 4183838 ~ 4222467 (+) | True | CI01000065_04183838_04222038 |
| CI01000065_04115052_04165049.mRNA | mRNA | upstream | 350325 | 4112278 ~ 4165429 (+) | True | CI01000065_04115052_04165049 |
| CI01000065_04547859_04555579.mRNA | mRNA | downstream | 21645 | 4547859 ~ 4555579 (+) | True | CI01000065_04547859_04555579 |
| CI01000065_04561164_04574594.mRNA | mRNA | downstream | 34904 | 4561118 ~ 4574656 (+) | True | CI01000065_04561164_04574594 |
| CI01000065_04578385_04586426.mRNA | mRNA | downstream | 51626 | 4577840 ~ 4586454 (+) | True | CI01000065_04578385_04586426 |
| CI01000065_04672707_04680741.mRNA | mRNA | downstream | 146425 | 4672639 ~ 4681582 (+) | True | CI01000065_04672707_04680741 |
| CI01000065_04684547_04687726.mRNA | mRNA | downstream | 157206 | 4683420 ~ 4687726 (+) | True | CI01000065_04684547_04687726 |
| TU305478 | other | upstream | 962630 | 3552804 ~ 3553124 (+) | False | G269225 |
| TU305428 | other | upstream | 1052826 | 3458957 ~ 3462928 (+) | True | G269181 |
| TU304991 | other | upstream | 1877549 | 2608907 ~ 2638205 (+) | True | G268805 |
| TU304676 | other | upstream | 2275756 | 2239159 ~ 2239998 (+) | True | G268525 |
| TU303653 | other | upstream | 3433099 | 1082153 ~ 1082655 (+) | True | G267577 |
