RNA id: TU306507



Basic Information


Item Value
RNA id TU306507
length 4035
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G270090
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4710009 ~ 4714110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTAATTTTGCTTCCCAAGTAAATGTATCTTATTTTTCTGGAAAACAAGACAAAAATACTGATATTGATTGATTGATTGATTTTTTGGACAGTGTAATCTTAATGTTTTACTACTTCATGGTTCGTGAATTATAAGACACCAACCATGAAAAAAATATTTTCCCCCTATTTTTTAATGCAATACTGTGAGCAAACAGGATTAGATTAGAAGATATTTTACATAACGATATGTGATACTAGAAGATCTCATTATGTAAAAGGAGCCTTTAAATATGAATCATTCTGAAGGTCTTTTATTAGGTTTATGACTTTCCTTGCAATCTGCTTACAGTCTTTCTTTTTATTGGCAGTAGTTTGTGTCTCACAGCAGGCGTTTGGTTTAGGAATATCAGACTTAAAGTTGTCTCTCTTGACCAAGGCCATTGTGTCAGTATTTACATAGATGGCATATATTTAGCAGTATAAAGATGTTTATTGGGACCTGTTATCCTGACACCTCAGTCCTGCACCTGATTGGCTTATACAGTATGTCATCAGCAAACAGAGACAATGCATTTGTCACTATAGGTATACATATCACTGCATCAAATATCAGTGAATACATTTTAATTTTATAGGTAAAAGATAGTGAATTCTCTTGTTTTCCTCACACACTCCAAACATTATAGGTGGGCAGGGGCGTTGGTTTAAACATTAGCGCTGTAACATTATACATGTGAGAAGATAGAAGGCAAAGAAGGGTGGTCAAAGGGCAAAGGTCTTTTGACGACCCTGTACCGGTGGTCATAATTATCCACACCATCACCTGCAGTAAGACTCTTCAAACACTAAAGAGGAAGTCTTGCATTAGAGGTCAAGGTTTACTGCCTCCACCCATGATAGTCACCATGGTGATATTATTTCATAATATGCTCATCATACTCCGCCCAGCAGAAGCAGAAGTCTAGTGGGCGCGTCTGTTCAGGTCTGAATCAGCTGTTCCCTCAATGCAAAACAATAGCTGGGTGTGTGAGTTGTGCTATTGCTCAACAAACATCCTTCACTCCTATATTGTATTAAGCATTCAACTGTCCTTCTGTACAAAATTGCTCGAATTATTGAATGAGAATCAATGGAGAACACTGGAGAGTAATTAAGTGTGTAGACTTAAGTGTTACGCTTTGACTGAATGTCATGTATTCAGGGATGCAAGCCACTCCAGTTTGGCTTTTGCTTTGTTTTAGGTCACGCATTTCTCAGGATTGTTTGATACGTGACTCCTACAGTGTCTATATCTTTTTAACTGTCACTGTCAGCTGGACACTTGGCACACATTTTTTATCACATATTTTAGTAATCATCATACATTAGGTATCATTCAAAAGCTTAAACATTCACAATCCTGTCGTCCTGTTTTGAAATTGGACATTGCACTCCCATAGAAACGGCTCAAAGTTTCTGATATCAACTTCAAATTCGGAACACAACTTGGTTAGACATATGGCTTGGATTTTCTAGCAATTTTAGAATGTATAAAACAAAAATGTTTAGCTCATTACATTTGCTTTACACTGCTGAGTATCTTCTTTAAAAAGAGACCAACCTGAGGTCTCTATTTCAAAGCATTCATGAATTACAACTATTTAAGTTCAGATCTATGCTCAAAAAGGGGGATGACCCCTAATGGTGAACGCACAACATCAACATCTTTGTTGATCCTGGAACAACATTTTAATCAACCAATCTGATTTGAGGGACAAGTTTACAGTTTATGTCAAGTTTAGGCTTACAACCAGGGTTACGTGCTTCTACATCAGTGTTATTCACCTATCATTTCCCTCTGATTTTTAGGGATAGGTTATGGGTAGGTTTAGGTTTAGGGGTGGGGATAGGGTTAGGACTACATTTTCAGATGGGAATGTTGTTCCAGGATCAACAAAATATGTTGACCCAGGAACACAGATGCTTTCGCACCAGGGAACTTTTTCATAGTTCCTAGAACTATTTGCGGAAGTATCCTGATTTTGCCGTGTTTGCACTGCAGGAGCTAGCAATGATTTTAGTTCTAGGAACTCATTTGGAGGGAACTAGTTGATTGGCCGAACACACGCGAAACACCGGCACCCGCCATTTTTAAAAAAGCGTGTACACACGCAGTTTATAGCCTATATATTTACTCCACAAAATAACTCTATGAACATGGAAAACAATGATAGATGGACCTCTCAAGTTAAGGAGAGAATCCAACGCAACTTTGAGGGGACCAAGCGAAACATGATTATGTATTTCTGCTCAGCTAGTGACACTGGACATGAACCACACGGCAAACGCTAATACTTTTTCATACACTGTCTTCTTTTTTTGTATAACAGTTCTACCTAATAACATATTAGACTGGCTGTTAAATAAATTGTAAACTAATGAAGATGGAGAACGGGAGAGCTGTGTGCTCAGGCTCTGTCTGGCATTCTCAGCAACGTCAAAATAAATATCCGCCGCGCCATCAAAATAAAAGTCACAACAACAAGCGCAACTTACGTCAATTCATAGTTTCTACTGCCGTTGTGAATGCAACTAGGAAAACGGCCCTAGGGGAACTATTAGTTCTCGGGGAACCACCCTGATGGCTAGTTCCGGTGTGAAAGCCCCTAATGTCTTGCAAAATCACAGTGACCGATCACTAACAGGTTAAAGGCTTATCAGTCCTTGCATTCTCAAAGCATGATCCGTCATCACCATCCTTCGTAATATGGATGGTGCTGGGATGTGCTGTGCACCTCATGAGACCTGATGCCCATCGCATCAGATTTAGTCTCTTCAGGCCATAGAGCGTTCTTCTTAATCCTACATGCAATCAGAGAAACTGTAGCTGAGATGATTTGAGTTTACAGCAGTTTTCTTCTTGCACTTGCTCCCAGAAATAAGTGTATCGAAAGACTTTATCAAAGACCACCAGCAAATAATTGTTTTTCATTCTTATACATGTCATTTTGTGTATTTTTTTACAGTATCATTACGGTCATACTTTATATTTGGTGGCCTTAACTACTACCTATTAACATGTAATACCTACAAGACTATGGATTTACTGTGCAACTACATGATGTTTCCACATTTACTGCTAATGAGTTTGAGGTATAGTTAGGTTTAGAAGTAAAGGTAGGGTTAGGATTATAGGGGTTTAAGGCGAGGGTGTCCAAACTCAGTCCTGGAGGGCCACTAACCTGCAGAGTTTAGCTCCAACTTGCCTGAACACACCTCTCTGGAAGTTTCTAGTATCCCTAGTAAGACCTTGATTATCTGGTTCAGGTGTGTTTAATTGGATTTGGAGCTAAACTTTGCAGGACAGTGGCCCTCCAGGAGTAGGATTGGACACCCCTGTTTTAATAACTAGGTAGTATAGTAACCGTCAACCTACCCCTAAACCTAACCTTAAACTTATAGTACCAGTACTTTCTTAGGTAAGTAATGTAAGTACATGTACATACTCTAAAATAAAGTATGACCATTTTATGAAATGTTTTAGCAGTTAAGGCCACCTGATGTAACTTTACTAACTCACTAGCAGTAAATGTGAGCATTTCAAAGTACTGCAATGTTCTCCAGTACTGATGACTAATGCAAGTGTTGGTAAGTTGCATGAGACAGCAGTGTGGATCATGTTCTCTTGTGTTTGATGCTGCTGAGGGAACATGATTCTGCAGGCTGTAGGTGTGGCTGTGGTGTTTTTGGTGACGCACAGTTAAGATTAAAGCTACTCTGCCTTCATGGTCAAATTTCCTAGCCCGAGGCCTCAAAATACATCACATTTTCTTCTCCCCAAACCTGTGCTCTGTCTTTGCTTGACAATGGAGCTGTCTAGACACCTCCTGCAGTCATTACTCCCCAGCTTTACCCAGAGATTGGGTGTGCCTGAGGGCTGCTGTGTTGGAATAGTTTGGTAGGAGATGTGAGGCGTTCCTACACAAAGAACTGATTTGAAATCATTCTGATATTGAGCTTTCATCTGTTCCACTTCTCTCTTCACGCGCAGTTCAACTGTTTCTTTATTAACTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306389 lncRNA upstream 183795 4515754 ~ 4526214 (+) True G270001
TU306479 lncRNA upstream 197401 4502213 ~ 4512608 (+) True G270062
TU306384 lncRNA upstream 204890 4500293 ~ 4505119 (+) True G269999
TU306344 lncRNA upstream 330507 4376057 ~ 4379502 (+) False G269967
TU306347 lncRNA upstream 330507 4376057 ~ 4379502 (+) True G269967
TU306471 lncRNA downstream 68759 4782869 ~ 4784552 (+) True G270054
TU306515 lncRNA downstream 110677 4824787 ~ 4825329 (+) True G270098
TU306517 lncRNA downstream 114550 4828660 ~ 4828880 (+) True G270100
TU306435 lncRNA downstream 154362 4868472 ~ 4870154 (+) False G270036
TU306437 lncRNA downstream 154362 4868472 ~ 4870254 (+) False G270036
CI01000065_04684547_04687726.mRNA mRNA upstream 22283 4683420 ~ 4687726 (+) True CI01000065_04684547_04687726
CI01000065_04672707_04680741.mRNA mRNA upstream 28427 4672639 ~ 4681582 (+) True CI01000065_04672707_04680741
CI01000065_04578385_04586426.mRNA mRNA upstream 123555 4577840 ~ 4586454 (+) True CI01000065_04578385_04586426
CI01000065_04561164_04574594.mRNA mRNA upstream 135353 4561118 ~ 4574656 (+) True CI01000065_04561164_04574594
CI01000065_04547859_04555579.mRNA mRNA upstream 154430 4547859 ~ 4555579 (+) True CI01000065_04547859_04555579
CI01000065_04723206_04763909.mRNA mRNA downstream 9096 4723206 ~ 4763975 (+) True CI01000065_04723206_04763909
CI01000065_04775143_04786346.mRNA mRNA downstream 57027 4771137 ~ 4786876 (+) True CI01000065_04775143_04786346
CI01000065_04790849_04819273.mRNA mRNA downstream 75469 4789579 ~ 4819537 (+) True CI01000065_04790849_04819273
CI01000065_04844180_04849353.mRNA mRNA downstream 130070 4844180 ~ 4849831 (+) True CI01000065_04844180_04849353
CI01000065_04851961_04862931.mRNA mRNA downstream 137851 4851961 ~ 4863003 (+) True CI01000065_04851961_04862931
TU305478 other upstream 1156885 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 1247081 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 2071804 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 2470011 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 3627354 1082153 ~ 1082655 (+) True G267577

Expression Profile