RNA id: TU306887


Basic Information

Item Value
RNA id TU306887
length 523
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G270442
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4764082 ~ 4764604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTTCCCACGGCAACCCACCAGTACCATCCGGATTAGAAAACATTATTACAAGCTTACCGTTGTGAATGGGGCTAAGATAAGGAGATAGTTTTGAATACTGGCTGGTTATGTACTTACTCAAAAACTTATTTTGGATAATTTTTAACCAAAAAAAGTTACGGACTGCTGCTTTAAATGATTTCTAATTACATTTGGAAAATGTTAAACTCACATCAGACCCTTTGAAAACCAGATAGTTTTCACATAAACTTACTCTACTCTCTCTTACAACAAAACCTGACATAAAATTAACATATAAATTACTGACATAACAGTAGAACTTTCTGTAAAGCTGCTTCAAAACAAAGCGTATGGTTAAAAGTGCTAAAAAAATAAATTTGACTGGACGATAACTTCACTGGAAAATGGATTAAAATTGTTTGAGATATTTAAGTAAAACTGTGCTAACATATTCATGTTTAATGACATAAAAAATAAACAATAAATTGTAAATTGATTATGTTAGAACTCACTCTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306816 lncRNA downstream 27401 4714765 ~ 4736681 (-) True G270373
TU306849 lncRNA downstream 108803 4653695 ~ 4655279 (-) True G270404
TU306779 lncRNA downstream 188381 4575439 ~ 4575701 (-) True G270345
TU306745 lncRNA downstream 280449 4483290 ~ 4483633 (-) True G270311
TU306668 lncRNA downstream 390868 4372764 ~ 4373214 (-) True G270242
TU306889 lncRNA upstream 3358 4767962 ~ 4768239 (-) True G270444
TU306890 lncRNA upstream 6765 4771369 ~ 4771599 (-) True G270445
TU306891 lncRNA upstream 7594 4772198 ~ 4772418 (-) True G270446
TU306893 lncRNA upstream 10262 4774866 ~ 4775070 (-) True G270448
TU306899 lncRNA upstream 25568 4790172 ~ 4794866 (-) True G270454
CI01000065_04705952_04710430.mRNA mRNA downstream 53494 4705899 ~ 4710588 (-) False CI01000065_04705952_04710430
CI01000065_04657955_04662886.mRNA mRNA downstream 100975 4657609 ~ 4663107 (-) True CI01000065_04657955_04662886
CI01000065_04507862_04513517.mRNA mRNA downstream 250565 4507862 ~ 4513517 (-) True CI01000065_04507862_04513517
CI01000065_04484009_04501087.mRNA mRNA downstream 262995 4484009 ~ 4501087 (-) True CI01000065_04484009_04501087
CI01000065_04470763_04478735.mRNA mRNA downstream 284974 4469999 ~ 4479108 (-) True CI01000065_04470763_04478735
CI01000065_04876578_04886460.mRNA mRNA upstream 111175 4875779 ~ 4887207 (-) True CI01000065_04876578_04886460
CI01000065_04939969_04941719.mRNA mRNA upstream 175291 4939895 ~ 4941766 (-) False CI01000065_04939969_04941719
CI01000065_04948358_04950696.mRNA mRNA upstream 183299 4947903 ~ 4950826 (-) True CI01000065_04948358_04950696
CI01000065_04953684_04953866.mRNA mRNA upstream 188577 4953181 ~ 4954390 (-) True CI01000065_04953684_04953866
TU305996 other downstream 953839 3807558 ~ 3810243 (-) True G269656
TU305995 other downstream 953922 3807558 ~ 3810160 (-) False G269656
TU306020 other downstream 989788 3773880 ~ 3774294 (-) True G269679
TU305632 other downstream 1451602 3308788 ~ 3312480 (-) True G269348
TU305628 other downstream 1451678 3308788 ~ 3312404 (-) False G269348

Expression Profile