Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU306433 |
| length | 1588 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G270036 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 4868472 ~ 4870254 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU306517 | lncRNA | upstream | 39687 | 4828660 ~ 4828880 (+) | True | G270100 |
| TU306515 | lncRNA | upstream | 43238 | 4824787 ~ 4825329 (+) | True | G270098 |
| TU306471 | lncRNA | upstream | 84015 | 4782869 ~ 4784552 (+) | True | G270054 |
| TU306507 | lncRNA | upstream | 154457 | 4710009 ~ 4714110 (+) | True | G270090 |
| TU306389 | lncRNA | upstream | 342353 | 4515754 ~ 4526214 (+) | True | G270001 |
| TU306527 | lncRNA | downstream | 17020 | 4887174 ~ 4887388 (+) | True | G270110 |
| TU306528 | lncRNA | downstream | 17704 | 4887858 ~ 4888057 (+) | True | G270111 |
| TU306530 | lncRNA | downstream | 18493 | 4888647 ~ 4888879 (+) | True | G270113 |
| CI01000065_04851961_04862931.mRNA | mRNA | upstream | 5564 | 4851961 ~ 4863003 (+) | True | CI01000065_04851961_04862931 |
| CI01000065_04844180_04849353.mRNA | mRNA | upstream | 18736 | 4844180 ~ 4849831 (+) | True | CI01000065_04844180_04849353 |
| CI01000065_04790849_04819273.mRNA | mRNA | upstream | 49030 | 4789579 ~ 4819537 (+) | True | CI01000065_04790849_04819273 |
| CI01000065_04775143_04786346.mRNA | mRNA | upstream | 81691 | 4771137 ~ 4786876 (+) | True | CI01000065_04775143_04786346 |
| CI01000065_04723206_04763909.mRNA | mRNA | upstream | 104592 | 4723206 ~ 4763975 (+) | True | CI01000065_04723206_04763909 |
| CI01000065_04922540_04936873.mRNA | mRNA | downstream | 52386 | 4922540 ~ 4937026 (+) | True | CI01000065_04922540_04936873 |
| CI01000065_04942340_04946407.mRNA | mRNA | downstream | 71722 | 4941876 ~ 4946407 (+) | True | CI01000065_04942340_04946407 |
| TU305478 | other | upstream | 1315443 | 3552804 ~ 3553124 (+) | False | G269225 |
| TU305428 | other | upstream | 1405639 | 3458957 ~ 3462928 (+) | True | G269181 |
| TU304991 | other | upstream | 2230362 | 2608907 ~ 2638205 (+) | True | G268805 |
| TU304676 | other | upstream | 2628569 | 2239159 ~ 2239998 (+) | True | G268525 |
| TU303653 | other | upstream | 3785912 | 1082153 ~ 1082655 (+) | True | G267577 |
