RNA id: TU306527


Basic Information

Item Value
RNA id TU306527
length 215
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G270110
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4887174 ~ 4887388 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATACCTGAAGGGGTTTGACAGCCTGATGCCACAGGAAATCCATTATTAGATCCTCAAAGAGCTTTTTATTCTCTAGTTCTTCTAAAAATCACCAATGTACTGAAGCTTCAAAGAACCCCAGCAAACCCATCGACTGATCTGAAGAACCTGTAATGTAACATCAAGAGCTCCAAAGAAGGTTTCAAGGTTGCTCCACTTGAGTGCTGCAAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306437 lncRNA upstream 16920 4868472 ~ 4870254 (+) False G270036
TU306435 lncRNA upstream 17020 4868472 ~ 4870154 (+) False G270036
TU306433 lncRNA upstream 17020 4868567 ~ 4870154 (+) True G270036
TU306517 lncRNA upstream 58294 4828660 ~ 4828880 (+) True G270100
TU306515 lncRNA upstream 61845 4824787 ~ 4825329 (+) True G270098
TU306528 lncRNA downstream 470 4887858 ~ 4888057 (+) True G270111
TU306530 lncRNA downstream 1259 4888647 ~ 4888879 (+) True G270113
CI01000065_04851961_04862931.mRNA mRNA upstream 24171 4851961 ~ 4863003 (+) True CI01000065_04851961_04862931
CI01000065_04844180_04849353.mRNA mRNA upstream 37343 4844180 ~ 4849831 (+) True CI01000065_04844180_04849353
CI01000065_04790849_04819273.mRNA mRNA upstream 67637 4789579 ~ 4819537 (+) True CI01000065_04790849_04819273
CI01000065_04775143_04786346.mRNA mRNA upstream 100298 4771137 ~ 4786876 (+) True CI01000065_04775143_04786346
CI01000065_04723206_04763909.mRNA mRNA upstream 123199 4723206 ~ 4763975 (+) True CI01000065_04723206_04763909
CI01000065_04922540_04936873.mRNA mRNA downstream 35152 4922540 ~ 4937026 (+) True CI01000065_04922540_04936873
CI01000065_04942340_04946407.mRNA mRNA downstream 54488 4941876 ~ 4946407 (+) True CI01000065_04942340_04946407
TU305478 other upstream 1334050 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 1424246 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 2248969 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 2647176 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 3804519 1082153 ~ 1082655 (+) True G267577

Expression Profile