RNA id: TU306528


Basic Information

Item Value
RNA id TU306528
length 200
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G270111
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4887858 ~ 4888057 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGACACAGCATTTGAATACATAAGTACAATTAAAAATTCAATGAAATGCTGTAGTTTTTAATAGATTTTATTTTTCAGTAGGCCTATAAACTAAACATGTTATCATATAAAAACATAGGCTGCGGGGAAATTCTAGAAACATTACATTATATTAATAATCAATGTTTTAAGCTGTCTTATTTTTTATTTATATGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306527 lncRNA upstream 470 4887174 ~ 4887388 (+) True G270110
TU306437 lncRNA upstream 17604 4868472 ~ 4870254 (+) False G270036
TU306435 lncRNA upstream 17704 4868472 ~ 4870154 (+) False G270036
TU306433 lncRNA upstream 17704 4868567 ~ 4870154 (+) True G270036
TU306517 lncRNA upstream 58978 4828660 ~ 4828880 (+) True G270100
TU306530 lncRNA downstream 590 4888647 ~ 4888879 (+) True G270113
CI01000065_04851961_04862931.mRNA mRNA upstream 24855 4851961 ~ 4863003 (+) True CI01000065_04851961_04862931
CI01000065_04844180_04849353.mRNA mRNA upstream 38027 4844180 ~ 4849831 (+) True CI01000065_04844180_04849353
CI01000065_04790849_04819273.mRNA mRNA upstream 68321 4789579 ~ 4819537 (+) True CI01000065_04790849_04819273
CI01000065_04775143_04786346.mRNA mRNA upstream 100982 4771137 ~ 4786876 (+) True CI01000065_04775143_04786346
CI01000065_04723206_04763909.mRNA mRNA upstream 123883 4723206 ~ 4763975 (+) True CI01000065_04723206_04763909
CI01000065_04922540_04936873.mRNA mRNA downstream 34483 4922540 ~ 4937026 (+) True CI01000065_04922540_04936873
CI01000065_04942340_04946407.mRNA mRNA downstream 53819 4941876 ~ 4946407 (+) True CI01000065_04942340_04946407
TU305478 other upstream 1334734 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 1424930 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 2249653 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 2647860 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 3805203 1082153 ~ 1082655 (+) True G267577

Expression Profile