RNA id: TU307080


Basic Information

Item Value
RNA id TU307080
length 204
lncRNA type sense_over
GC content 0.34
exon number 1
gene id CI01000066_00273310_00276428
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 273157 ~ 276498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATATACATATGTTGTGCTGCATGTCATGTAGTTTCAGTACATCAGTTTATCCACTTGGTGGTGGTAATGAGTGAATGAGAAAAACAGGCAATTCTTAGCACCCAATTTGATTATTCATTATGATAATCAAATGCAACGGATGTAAAAAAAAATTGTATATTTTTTTACATTATGCAGGGTGCTCTCACTGTGCATTACTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307046 lncRNA upstream 682 225134 ~ 275259 (+) True G270567
TU307073 lncRNA upstream 8300 265876 ~ 267641 (+) True G270594
TU307066 lncRNA upstream 18616 253654 ~ 257325 (+) True G270587
TU307065 lncRNA upstream 23550 252073 ~ 252391 (+) True G270586
TU307018 lncRNA upstream 79510 194686 ~ 196431 (+) True G270547
TU307083 lncRNA downstream 762 276906 ~ 277129 (+) True G270602
TU307084 lncRNA downstream 1135 277279 ~ 277662 (+) True G270603
TU307130 lncRNA downstream 258133 534277 ~ 534507 (+) True G270633
TU307122 lncRNA downstream 293033 569177 ~ 577204 (+) True G270625
TU307146 lncRNA downstream 361337 637481 ~ 643950 (+) True G270648
CI01000066_00151325_00157474.mRNA mRNA upstream 117797 151236 ~ 158144 (+) True CI01000066_00151325_00157474
CI01000066_00109609_00131845.mRNA mRNA upstream 143762 109609 ~ 132179 (+) True CI01000066_00109609_00131845
CI01000066_00063935_00066860.mRNA mRNA upstream 208748 63935 ~ 67193 (+) True CI01000066_00063935_00066860
CI01000066_00043800_00047188.mRNA mRNA upstream 228186 43492 ~ 47755 (+) True CI01000066_00043800_00047188
CI01000066_00019553_00029834.mRNA mRNA upstream 245410 19458 ~ 30531 (+) False CI01000066_00019553_00029834
CI01000066_00300974_00304363.mRNA mRNA downstream 24092 300236 ~ 304408 (+) True CI01000066_00300974_00304363
CI01000066_00344664_00393673.mRNA mRNA downstream 68520 344664 ~ 394325 (+) True CI01000066_00344664_00393673
CI01000066_00400218_00405333.mRNA mRNA downstream 123636 399780 ~ 405603 (+) True CI01000066_00400218_00405333
CI01000066_00419486_00436877.mRNA mRNA downstream 142774 418918 ~ 437551 (+) True CI01000066_00419486_00436877
CI01000066_00451123_00488660.mRNA mRNA downstream 172919 449063 ~ 488712 (+) True CI01000066_00451123_00488660
TU307010 other upstream 89264 184870 ~ 186677 (+) False G270546
TU307016 other upstream 90298 184528 ~ 185643 (+) False G270546
TU307009 other upstream 90298 184870 ~ 185643 (+) False G270546
TU306975 other upstream 255668 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 1568308 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 1682962 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 1993025 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 2026066 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 2154566 2430710 ~ 2439169 (+) True G271105

Expression Profile