RNA id: CI01000066_00788981_00792403.mRNA


Basic Information

Item Value
RNA id CI01000066_00788981_00792403.mRNA
length 1301
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000066_00788981_00792403
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 788414 ~ 792768 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCTTCAATATTATTATTTTTTTAATAAATGTAACATTATAATGATCTGTTTAATAATTAATATATTTAAATGTTTCAAATGAATCTAAATTAAAACATTGTTGACTGCCCTAATTTTAAGCGTTTTCTTTGTTTTGTTTAAATGACTTTAAAACCAAGAAGAACCCTCTGCCAATCGAGTGCATTGGCAGTAGACTGAACAAATGCACAAATGGTAATCCTCTATCTGTAGCGCCCACTTACCAGCCTTTTCGATCAGTTTGGACTCCTAGGGAAGCGTTACATCACTTAATTAATATTCATGAGCCAAGCTTTTCAAATCGTCCCTACGCCCCTGCTTTTTTGGACATTCGACGGCAGCGAGATGACAGGAAGTGATGGGAGGCAGCCATGGTACTACGGCTGGGGTTTTAATCTACCACGAGGACAAGCTCTGCTGGACAAGTGGAATCAGATCCCAGATTCCACGGATATTCTTCTCACACACTGCCCTCCTCTGGGTTTCTTGGACTGGGTGCCCAGGAAGATGCAACGTGTTGGCTGTATGGAACTGTTAAACACCGTCCAGAGGAGAGTTCAGCCCAAACTACATGTATTTGGACACATTCATGAAGGTTACGGTATGATGACAGATGGAACCACCACGTTTGTTAATGCCTCGGCGTGCACGGTGAACTTCCAGCCTATGAACCCGCCAATCGTTTTCGACTTGCCCAATCCCAGGAGCTCATGATTGAACTGAGACCCGCCCACCGCCACCTTCTTTCAATCAGGGTCCCTTTCTTGAGCATATACGGATGCTGCGTAGTGTATATAGAGCGAGCGAGAGACTCTAATTTGGATATTCCCAAGGATATTTTCATCCATTTTTGTGCCATGTGCCGCCCTCAGACACAAAATACTGACACAGATGTTTGAACTCTTTTTCTGAACTTGACTCTTGTGTTGCACTTGAATCGGCGTGACAATCGCGTGTACTTAAGGTCATGGAAGCCAAACTTTCTCCTCATTGGCTGGCACTTATTTAAGGAATTTAAACCTTGTAGCCTCAATGGACCTCTGACTCGGGAAAAAAAAATCTTTTTTTCTTTTGCTCTGGAGTCACTCTTGAAAGTTACAGGATGTGCCCAGAAGAAACAGTGCTTTGGTGCAAACAAGTTTGTTCAGGGTCTTTACCATTTCCCTCTTTCTCTCTCTCTCAGTCTCAGTCTCTCATTCTGCTTTTTCCTATCTGCTCTGTTGTTATATGTTACTCTTTTGAACTTGAGGCCATGTTGGATTATACACTGGGAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308436 lncRNA downstream 35524 745936 ~ 752890 (-) True G271786
TU308416 lncRNA downstream 121578 664537 ~ 666836 (-) False G271772
TU308414 lncRNA downstream 121578 665238 ~ 666836 (-) True G271772
TU308419 lncRNA downstream 126312 649459 ~ 662102 (-) True G271774
TU308504 lncRNA downstream 132211 655000 ~ 656203 (-) True G271849
TU308533 lncRNA upstream 144788 937556 ~ 937822 (-) True CI01000066_00938534_00939532
TU308546 lncRNA upstream 173452 966220 ~ 966453 (-) True G271889
TU308547 lncRNA upstream 174334 967102 ~ 967354 (-) True G271890
TU308548 lncRNA upstream 229265 1022033 ~ 1022246 (-) True G271891
TU308553 lncRNA upstream 246097 1038865 ~ 1039137 (-) True G271896
CI01000066_00730057_00737661.mRNA mRNA downstream 50753 729715 ~ 737661 (-) True CI01000066_00730057_00737661
CI01000066_00711133_00728657.mRNA mRNA downstream 59757 711133 ~ 728657 (-) True CI01000066_00711133_00728657
CI01000066_00679999_00685380.mRNA mRNA downstream 103034 679652 ~ 685380 (-) True CI01000066_00679999_00685380
CI01000066_00675433_00675726.mRNA mRNA downstream 112203 674881 ~ 676211 (-) True CI01000066_00675433_00675726
CI01000066_00642830_00643160.mRNA mRNA downstream 145165 642518 ~ 643249 (-) True CI01000066_00642830_00643160
CI01000066_00805568_00827944.mRNA mRNA upstream 11729 804497 ~ 827944 (-) True CI01000066_00805568_00827944
CI01000066_00832790_00856736.mRNA mRNA upstream 39538 832306 ~ 857910 (-) True CI01000066_00832790_00856736
CI01000066_00858315_00871460.mRNA mRNA upstream 65510 858278 ~ 871541 (-) True CI01000066_00858315_00871460
CI01000066_00885041_00912917.mRNA mRNA upstream 91776 884544 ~ 912917 (-) True CI01000066_00885041_00912917
CI01000066_00938534_00939532.mRNA mRNA upstream 144583 937351 ~ 939532 (-) False CI01000066_00938534_00939532
TU308664 other upstream 1030261 1824590 ~ 1824703 (-) True G271984
TU308908 other upstream 1048911 1841679 ~ 1841743 (-) True G272212
TU308919 other upstream 1166334 1959102 ~ 1985228 (-) True G272221

Expression Profile