RNA id: TU308533


Basic Information

Item Value
RNA id TU308533
length 203
lncRNA type sense_over
GC content 0.38
exon number 2
gene id CI01000066_00938534_00939532
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 937351 ~ 939532 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAGACGAGGAATAAAGGTCTTGTCTAGGGAAACAATCAGTCATTTTCTTAAAAAAAATAAAAATGTATATACATTTTAGTGCTTTTTTAGTACTTCTGCCTGCATCAGACCTTTCCAACGTGATTACGTTTTTAGAAAATGGCCGATCGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGGATCATGTAGAGCCCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308436 lncRNA downstream 184666 745936 ~ 752890 (-) True G271786
TU308416 lncRNA downstream 270720 664537 ~ 666836 (-) False G271772
TU308414 lncRNA downstream 270720 665238 ~ 666836 (-) True G271772
TU308419 lncRNA downstream 275454 649459 ~ 662102 (-) True G271774
TU308504 lncRNA downstream 281353 655000 ~ 656203 (-) True G271849
TU308546 lncRNA upstream 28398 966220 ~ 966453 (-) True G271889
TU308547 lncRNA upstream 29280 967102 ~ 967354 (-) True G271890
TU308548 lncRNA upstream 84211 1022033 ~ 1022246 (-) True G271891
TU308553 lncRNA upstream 101043 1038865 ~ 1039137 (-) True G271896
TU308585 lncRNA upstream 112188 1050010 ~ 1050249 (-) True G271912
CI01000066_00885041_00912917.mRNA mRNA downstream 24639 884544 ~ 912917 (-) True CI01000066_00885041_00912917
CI01000066_00858315_00871460.mRNA mRNA downstream 66015 858278 ~ 871541 (-) True CI01000066_00858315_00871460
CI01000066_00832790_00856736.mRNA mRNA downstream 79646 832306 ~ 857910 (-) True CI01000066_00832790_00856736
CI01000066_00805568_00827944.mRNA mRNA downstream 109612 804497 ~ 827944 (-) True CI01000066_00805568_00827944
CI01000066_00788981_00792403.mRNA mRNA downstream 144788 788414 ~ 792768 (-) True CI01000066_00788981_00792403
CI01000066_00975554_00997209.mRNA mRNA upstream 37166 974988 ~ 997417 (-) True CI01000066_00975554_00997209
CI01000066_01031147_01037984.mRNA mRNA upstream 93065 1030887 ~ 1037987 (-) True CI01000066_01031147_01037984
CI01000066_01046248_01048613.mRNA mRNA upstream 108399 1046221 ~ 1049364 (-) True CI01000066_01046248_01048613
CI01000066_01152726_01162533.mRNA mRNA upstream 214509 1152331 ~ 1162533 (-) True CI01000066_01152726_01162533
CI01000066_01270085_01272411.mRNA mRNA upstream 331664 1269486 ~ 1272635 (-) True CI01000066_01270085_01272411
TU308664 other upstream 885207 1824590 ~ 1824703 (-) True G271984
TU308908 other upstream 903857 1841679 ~ 1841743 (-) True G272212
TU308919 other upstream 1021280 1959102 ~ 1985228 (-) True G272221

Expression Profile