RNA id: TU308664


Basic Information

Item Value
RNA id TU308664
length 114
RNA type TUCP
GC content 0.40
exon number 1
gene id G271984
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1824590 ~ 1824703 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGAATTGTGTGCGGAAGTATTCCCACGATTTCTTTTCACTAAAATCCTCACACCCTCCAAAATGAGTAAATCAAGGACGACGAAGAAAGAGAAAATAAGTGTGGCAAGCGAGATTGACCGCATTGAAGAGCGCAAATTACACTGTAAAAACAACCTGGAGAGGGCAGAGTTCAGACAGAGAAAAGAACAACTCTCGGACAGTGACAGGCTCGCGCTGGAAGATGAGATGACCATAATGAATGAAAGAATACAGAAATATGAAAAGGAGCTGCAGGTACTGAGAGGAGAGAACAGGAAGAACATGATGCTGTCCGTCGCTCTATTAGCCATCAGTGCCCTTTTCTACTACACTTTCATATATTAAAGAGGTATTTTCTGTCATGCCAAACACTGACTGAGAAAGAGCTATGGGGAGACTGATATCTATTCATACCATCAGTCTCCACTCGTCATTGGTTTGTTCAGAGGTTGTGGTCAGTGTCAGTGTCGTTTTAGCCATGAATACATTGCGCCATCTTCATCTTGGCTTCGGCATCCTGGATTGTCCGAACACTGCTTTATGTTTGCTTTGTAACAGAGTGACATTAGATGCTTGCGCATCAGAGAAAGACACAGATTGGGGATTAAATGTATGTTTATATGATCTTCATTTTTGGGAACTCTTATGTACTTTACGAGATCACAAATTCATTTTATAAAGCATCAGTGTAGACATTTACCCAATAATGACTCGGTGGCGTTTCTCTCCAGATCACTGTTTATTGCATTTCAACAGGACTAACATGCACAAAGGTGGGAAGGGCAGAGGGTGTTATTCCATCCAAAAATAAAATTTATCAACAAAATGTTCAATTGAAATAAAAAACAGCCATCAATAAAATGCAATACTGTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308748 lncRNA downstream 10916 1808682 ~ 1812113 (-) True G272066
TU308735 lncRNA downstream 21602 1799964 ~ 1801427 (-) True G272053
TU308885 lncRNA downstream 118765 1703991 ~ 1704264 (-) True G272194
TU308884 lncRNA downstream 119118 1703710 ~ 1703911 (-) True G272193
TU308853 lncRNA downstream 224600 1595740 ~ 1598429 (-) True G272165
TU308720 lncRNA upstream 70392 1895095 ~ 1915276 (-) True G272038
TU308956 lncRNA upstream 189081 2013784 ~ 2016832 (-) True G272256
TU308715 lncRNA upstream 231297 2056000 ~ 2070979 (-) True G272033
TU308975 lncRNA upstream 302857 2127560 ~ 2127840 (-) True G272271
TU308990 lncRNA upstream 339267 2163970 ~ 2164196 (-) True G272286
CI01000066_01788491_01792709.mRNA mRNA downstream 30053 1787777 ~ 1792976 (-) True CI01000066_01788491_01792709
CI01000066_01780056_01782937.mRNA mRNA downstream 39937 1779905 ~ 1783092 (-) True CI01000066_01780056_01782937
CI01000066_01770241_01778472.mRNA mRNA downstream 44557 1770088 ~ 1778472 (-) True CI01000066_01770241_01778472
CI01000066_01759103_01760191.mRNA mRNA downstream 62329 1759097 ~ 1760700 (-) True CI01000066_01759103_01760191
CI01000066_01752509_01757131.mRNA mRNA downstream 65898 1751811 ~ 1757131 (-) True CI01000066_01752509_01757131
CI01000066_01843043_01848783.mRNA mRNA upstream 17851 1842554 ~ 1849466 (-) False CI01000066_01843043_01848783
CI01000066_01850128_01881359.mRNA mRNA upstream 25247 1849950 ~ 1881359 (-) True CI01000066_01850128_01881359
CI01000066_01889174_01893489.mRNA mRNA upstream 64471 1889174 ~ 1893547 (-) True CI01000066_01889174_01893489
CI01000066_01903226_01906591.mRNA mRNA upstream 78505 1903208 ~ 1907648 (-) True CI01000066_01903226_01906591
CI01000066_01921007_01923459.mRNA mRNA upstream 96016 1920719 ~ 1923459 (-) True CI01000066_01921007_01923459
TU308908 other upstream 16976 1841679 ~ 1841743 (-) True G272212
TU308919 other upstream 134399 1959102 ~ 1985228 (-) True G272221

Expression Profile