RNA id: CI01000066_02320093_02321778.mRNA



Basic Information


Item Value
RNA id CI01000066_02320093_02321778.mRNA
length 790
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000066_02320093_02321778
representative True

Chromosome Information


Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2320093 ~ 2322043 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACGTGGGATGCAGGGCTGGCGGTGACGGCGCGGGCCTGGGCGAGATTCTGCGTCTTTAAACACAACATTTATCTTAAGGAGGTGAGGAGGATGCACCCTACATTCACTTCTGTGGGTGAAAACATCTGGGCTGGATATCCATATACCAGTTTCACAGTGAAATCTGCAGTGAAATTATGGGCGGATGAGGTCAAACATTACAATTACTATGCGGAAAAGCCAAACCAGTGTGTGAAAGGAAAAGAGTGCGGTCACTACACACAGGTTGTTTGGGCAGATACGTACAAGGTTGGTTGTGCCACGCAGGCCTGTCCAAACGGAGTGGCTAAAACACGTTTCTCTACAGAGCCAGGAATCATATTTGTGTGCAACTATGCAACAGCAGGAAATTACTTTGGCAAGGATCCATATAGAACAGGATCATCGTGCAGTGGCTGCGGTCTAGAGAAGTGTGAAAACAAACTCTGTCGAAACTCAACCCGCGATGCACTGCAGAGTAAGACACACCCTGATCTCGCAATCTGAACTTACAGTGACCCCAGAAAGCATCTGTTCACTCACAATTATAAAGTCTGACTGTCATCGCAATACATACAAGTTTGTGTGTCTGCGCACAAATGCTTTTGTTGATGCCGGAAGCAGATTACTTGGCATTAAACCATAAACAAAACAACACTAGACCACATAAACATGCATTAAATAGAATGAACATACACTCTTAAAAATACAGGCTCCAAAAGGGTTTTTTTTGCAGTGATGTCATTACATCACATTATTGGCCTTTGAGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU307681 lncRNA upstream 1853 2317937 ~ 2318240 (+) True G271104
TU307706 lncRNA upstream 4468 2315003 ~ 2315625 (+) True G271129
TU307701 lncRNA upstream 6880 2302834 ~ 2313213 (+) True G271124
TU307664 lncRNA upstream 10561 2292006 ~ 2309532 (+) True G271090
TU307688 lncRNA upstream 33259 2285313 ~ 2286834 (+) True G271111
TU307727 lncRNA downstream 12134 2334177 ~ 2334388 (+) True G271143
TU307658 lncRNA downstream 12553 2334596 ~ 2393844 (+) False G271086
TU307659 lncRNA downstream 12553 2334596 ~ 2393844 (+) False G271086
TU307657 lncRNA downstream 66752 2388795 ~ 2393844 (+) True G271086
TU307790 lncRNA downstream 218667 2540710 ~ 2540943 (+) True G271206
CI01000066_02296138_02305439.mRNA mRNA upstream 14456 2296071 ~ 2305637 (+) False CI01000066_02296138_02305439
CI01000066_02287451_02287819.mRNA mRNA upstream 31559 2287344 ~ 2288534 (+) True CI01000066_02287451_02287819
CI01000066_02274624_02277624.mRNA mRNA upstream 41974 2274557 ~ 2278119 (+) False CI01000066_02274624_02277624
CI01000066_02144721_02147772.mRNA mRNA upstream 170913 2144721 ~ 2149180 (+) True CI01000066_02144721_02147772
CI01000066_02124655_02126692.mRNA mRNA upstream 193230 2124655 ~ 2126863 (+) True CI01000066_02124655_02126692
CI01000066_02330898_02340303.mRNA mRNA downstream 8855 2330898 ~ 2341338 (+) True CI01000066_02330898_02340303
CI01000066_02456114_02457813.mRNA mRNA downstream 133253 2455296 ~ 2458517 (+) True CI01000066_02456114_02457813
CI01000066_02503549_02509560.mRNA mRNA downstream 180045 2502088 ~ 2510262 (+) True CI01000066_02503549_02509560
CI01000066_02511030_02521229.mRNA mRNA downstream 188911 2510954 ~ 2521490 (+) True CI01000066_02511030_02521229
CI01000066_02603700_02610129.mRNA mRNA downstream 280730 2602773 ~ 2610667 (+) True CI01000066_02603700_02610129
TU307667 other upstream 13073 2306852 ~ 2307020 (+) True G271092
TU307673 other upstream 40533 2269169 ~ 2279560 (+) True G271097
TU307529 other upstream 335079 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307522 other upstream 472341 1844452 ~ 1847752 (+) True G270973
TU307010 other upstream 2133416 184870 ~ 186677 (+) False G270546
TU307682 other downstream 108667 2430710 ~ 2439169 (+) True G271105
TU308039 other downstream 890961 3213004 ~ 3213245 (+) True G271433
TU308049 other downstream 1024750 3346793 ~ 3353514 (+) True G271443

Expression Profile