RNA id: CI01000066_02438884_02448563.mRNA


Basic Information

Item Value
RNA id CI01000066_02438884_02448563.mRNA
length 2318
RNA type mRNA
GC content 0.49
exon number 16
gene id CI01000066_02438884_02448563
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2438834 ~ 2448839 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGATTGAAGCTCACTGATAAAGTAGAAGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATCTAACCACCCACAACAAGAGCATCTCATGCATCATGTCGTATTCAACACTTAATTTCCCAGCTGTCCCATCAGCATATTGAGCACATGACCAACTAATTACGTCTGATCTGAGAGCTGCTCGTCTTTAGACCTCCATTATTCACAATGTACTTCTGCCCACTTTAATCAGTAGGATAGCAGAGAGAAGACAGGAAAAGATGGTATGGGAACAGGATCAGGAAGTGACGTCTTGTCAAGAGAGTTCTTCCAGTTCCAGTCAGATTGTGAAGTTGAGGACGTGTGGATTTTTCTGCGTATGATTAACATGTTGAAGAGCTCTTGGAGTGGCGTGTTTTCTGAGATGAACACAATGCTTACAGGGCAGAGATGGGAGACAATAGACCCGTTTACACAAATTGATGGGTCGTCATTTACATCCATCGTGGTTCGTTGGTCCAAAAACATCGGAAGTTTTGATCGTGGCAAAGAAGAAATCCTGCCTCTGAAAGAAGACTCCTCACACTCCATATCCAAGAGCAAGACTTTCTGTCACAGTTGCGTCAGAGCCGGGTTGCGTGAGGTTTTGGATGTCGTAGACGTGCCGCCACATCCAGACAGACCATTAATAGATGCACTCACAATCTCAAATAAATTCCCAGTCACAGATCCCGTCAAACAGGAGAGCCGGATGGCAGTCCAGAAGAGCTCGGAAACCAAGCTCTATAATGGCTCAGACAAGGACGTATCGGCGTCTGGAAACAAACTTACGAAAAAGGAGTCACTCAAGGTACAAAAGAAGAACTACAGGGAAGAGAAGAAACGTGCCACTAAAGAACTGCTCAGCACCATCACTGATCCGTCTGTCATCGTCATGGCCGACTGGCTCAAGATCCGTGGCACGTTGAAGAGCTGGACCAAGCTGTGGTGTGTGCTGAAGCCAGGCGTCCTGCTGATCTATAAGACCAATAAGAACGGCCAGTGGGTCGGTACCGTGCTGCTTAACGCCTGTGAGCTCATCGAGAGACCCTCGAAGAAGGATGGGTTCTGCTTCAAGCTCTTCCACCCGCTCGAGCAGTCCATCTGGGCCGTCAAGGGTCCCAAAGGAGAAGCCGTGGGGTCCATCACACAGCCGTTACCCAGCAGCCACCTGATCTTCAGAGCGGCTTCAGAATCTGACGGCCGGTGTTGGATGGATGCTCTTGAGCTGGCTCTGAAATGCTCGAGTTTGCTGAAGAGAACGATGATCAGAGAGGGCAAAGAGGAGACGCCGCAGACCGCAGAGCAGTCGCACATCAACTTCTACAGTCTGCTGCGGGCGCACAACATGCAGGGCTTTCAGTTTAACGACAGTGACCAGTTCAAGGATCCGGACCTGTACTCGGATAAGTCGGACCGTGAGAATGAGCAGGAGCAGGAGGAGTGGGAAAATGAGGTGATGGAGAAAAGCGAAGAGAGCGACAGCGACACGTCGGAGCGACAGGAAGACTCGTACGTCGACCTGGATCCCAACGAGACGCTGCGGGAAACGCCGTACATTGAGCAGAGCCACGAGGAGCTCGGAGAGGCTGGCGAAGAGTCTCAGACAGAGACAGTATCAGAAGAGAATAAATCTCTGATCTGGACTCTACTGAAGCAGGTCCGGCCCGGCATGGACCTGTCCAAAGTCGTGCTTCCCACCTTCATCTTGGAGCCACGATCCTTCCTGGACAAACTGTCCGATTACTACTACCACGCTGACTTCCTGTCGGAAGCGGCGGTGGAGGAGAACGCTTATAACCGAATGAAGAAGGTGGTCAAATGGTACATTTCTGGATTCTACAAGAAGCCAAAGGGTTTAAAGAAACCGTATAACCCCATTATCGGAGAAACATTTCGCTGTTTATGGATCCACGCCAGGACGAACAGCAAAACCTTCTACATCGCAGAACAGGTATCCCATCATCCTCCAGTTTCAGCCTTTTATGTCAGTAACAGGAAGGATGGCTTTTGTCTCAGCGGCAGCATCCTGGCCAAGTCCAAGTTTTATGGAAACTCTCTGTCGGCCATCTTAGACGGTGAAGCCAGGCTGTCTTTTCTGAACAGAGGGGAGGACTATGTGATGAACATGCCCTACGCTCACTGCAAAGGGACACATCTAGGTATGTTTACATGTGTAGTGACTCGTTTCGACTGGTTTAGATACGTGTGCAGTATCCAGTCTAGATTTTGCATTTAGTTAGAATATGACGGTTTGGTCACACTTTCTACAGTATACCTCTTAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309038 lncRNA downstream 104446 2334178 ~ 2334388 (-) True G272317
TU308721 lncRNA downstream 120407 2317928 ~ 2318427 (-) True G272039
TU308742 lncRNA downstream 151848 2285318 ~ 2286986 (-) True G272060
TU309014 lncRNA downstream 169773 2268818 ~ 2269061 (-) True G272310
TU309008 lncRNA downstream 186282 2252275 ~ 2252552 (-) True G272304
TU308703 lncRNA upstream 75663 2524502 ~ 2526631 (-) True G272021
TU309088 lncRNA upstream 81959 2530798 ~ 2532380 (-) True G272367
TU308768 lncRNA upstream 313309 2762148 ~ 2773639 (-) True G272086
TU308757 lncRNA upstream 327122 2775961 ~ 2858298 (-) True G272075
TU308710 lncRNA upstream 479225 2936019 ~ 2936038 (-) True G272028
CI01000066_02395532_02401122.mRNA mRNA downstream 37712 2395296 ~ 2401122 (-) True CI01000066_02395532_02401122
CI01000066_02388814_02390434.mRNA mRNA downstream 48400 2388620 ~ 2390434 (-) True CI01000066_02388814_02390434
CI01000066_02325374_02330855.mRNA mRNA downstream 107979 2324998 ~ 2330855 (-) True CI01000066_02325374_02330855
CI01000066_02256946_02264417.mRNA mRNA downstream 173353 2256594 ~ 2265481 (-) True CI01000066_02256946_02264417
CI01000066_02197683_02248608.mRNA mRNA downstream 187671 2197683 ~ 2251163 (-) False CI01000066_02197683_02248608
CI01000066_02459724_02480935.mRNA mRNA upstream 10866 2459705 ~ 2481167 (-) True CI01000066_02459724_02480935
CI01000066_02536961_02545237.mRNA mRNA upstream 87334 2536173 ~ 2545237 (-) True CI01000066_02536961_02545237
CI01000066_02548050_02596039.mRNA mRNA upstream 98901 2547740 ~ 2596419 (-) True CI01000066_02548050_02596039
CI01000066_02613320_02623007.mRNA mRNA upstream 164421 2613260 ~ 2623007 (-) True CI01000066_02613320_02623007
CI01000066_02652332_02680009.mRNA mRNA upstream 202488 2651327 ~ 2680040 (-) True CI01000066_02652332_02680009
TU308919 other downstream 453606 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 589975 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 614131 1824590 ~ 1824703 (-) True G271984

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055175 True 2046 mRNA 0.50 17 NC_007115.7 2396024 ~ 2440175 (-)