RNA id: CI01000066_02832702_02867162.mRNA



Basic Information


Item Value
RNA id CI01000066_02832702_02867162.mRNA
length 2092
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000066_02832702_02867162
representative False

Chromosome Information


Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2831625 ~ 2867388 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAATGGTAAGCAAAGTTACATTTGCCACTCCAACCCAAATATTTTTTTTATGATTTTTTATTTTTATGATTTCATTTTTATGGATTTTTTTTATTCAAAAATGATATTTAAAGGCTAAATGAAATATGACCTTTAAATTTGACAGGTTTGATGAGATTCACCCGTTTACAGTCTGTCTCTTGTGCTTTACATCACTCATTACTGTGCAACATTAACCTTATTGTATTTTTATCCAAAATAGGGCAATGTGAGCATTATGGAGCGCTAAACTCTCACATGTAATTTGTTTTATTCATACTCGACACCGGAGGGCACCCTCACGCAGAAAGTCCACAAGTTAGACTCATAGAAGTATTAAACTTTTGACGTTCCAGGAAATCCCTAATGCAGATCTATGCAAATAGAGAATTAACACACCATTGTGACAATATATGGTTTATCTGTGTTCTTCAAGCCATCTTGGTTATTTTTGTAAGGATAATGTATATTTATAATGCAATGCTAATCGACATACCCTTTATCACTGTATAGAATACTATCAAATAGTATAATTTCTGCCTCATTCTGTGATAAGAAGCCACATCAGTACACAGAAGGAAGTTATTTCAATCACTCGACTGATGCTATAACGTGATTTTGGAGTAAAATATGCTGTGCTAAGCTAAATTTGATGCTGTGCTAAGCTAAATTACCATCAATTCTTTTGGCCATGATAACCATGATGTGAAAAATCTGATATTGTGAAAGCCCTAGTTGATCTATAATGGGTGATGGAGCACAGCTGCAATTCAGAAACAGAGTTGTTGGATTAAAAACACGAAAATTCATCCACTTCTTCTGAAAGGTTCTGGTTCAGCGCTAACCAAAGCGCGAACGCAGATCTGAATTTAGCAGTTGATAACGTGCCGCACTAAACATGCAAGTGTGATTGTATCAAATGTAAATCAAATTTTTGTCCTTTAGAAGCTTAATTCAAAATTCATTTGGCTCAACAATTGTTGGTTTGAATGGGCATGAAGCCTCTAATCACTACTGCACCGGCTGAACTCATTGTGGGTTTAAACTTTCCTGTAATGTGCAAAAATGCCTTCAGGCTAGAGAAAGGGCTGGAATGCAATAGAGAAACACTAAAGAGGGAAGTTGTGGATGCTCTCACATCTGACAGCTTCAGCTGGAGACATTCAGTAGTCCAGACAAAAGTCTGCGCATGTAGATCCAATCAGCCAGAAGCCATCATATCACTGACGGATGTTTACAATAGGCCGGACGGATACGGCACAGACGAGGCCGTGTCGCTGAGCAGAAGTGAAAAGCGTCGCTCAGCAGCTCGTGTGAGGGGTTATCAGATGATTAATGGACTGTGTGTGCAAATGTCCACCGCTGCCAAAGTCCTCTTTACACCGGCTTTGTTTACACTGATCACTTCCACAAACCAGCCGATGGACGTCACAGCCACTAAAACGGCTCTTGGGATAAAGTTCTGGGTAAGAACCAAAGCTGGAGGCTCTCGAAAGCGGCCACAGGAACAAGGAAGTGGTTTCCACATGGAGTCCACATCTCTTGTACCTCACTTCCTCTTGGACTTGAAAACAATGAGCCAAAAAATCAAGACCAGAGCTCTATGCTATGTGCTCACTATCAAGGGCCTATTGCTGCCTTTAAGTCTTCCTCCAAGAATGAGAGTATCACTTCCTCATCTGAGGGCCGATGCTTGTTTGTTTTCGCTCCACATACAGAGAGCAAAATCCAGGTTTGTTTATGCACGTTTGAAAAATGTACAGCAGCTCACGAAGAAAAAGGCCTGCTCGTGTTTCGTAAATCACTCAGTGTTTTACATGACGTTCTTGGATGGGCCCGTTTAAAACAATGACACACACACACACACACACACACAAAGATTAGAAATGCATCCAAAACAACAATTCGCTGCGGCGTTGAACAATCAGATTCAATTCTGTTGATAAGATGCAGGGCTGTATCTCCATCTGACTCGCAGAGAGAGGTTCATAAATCGCAGCGGTGACGCTTTCAGGGACAGAGGGAGGGAAAACACGAGCCGATCCCAAGCTGCCTTTACACTGTCACACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU307853 lncRNA upstream 141077 2690233 ~ 2690548 (+) True G271267
TU307835 lncRNA upstream 151469 2665216 ~ 2680156 (+) False G271249
TU307834 lncRNA upstream 163838 2666469 ~ 2667787 (+) True G271249
TU307675 lncRNA upstream 181568 2593900 ~ 2650057 (+) True G271098
TU307952 lncRNA downstream 60676 2928064 ~ 2929367 (+) True G271356
TU307964 lncRNA downstream 77963 2945351 ~ 2945828 (+) True G271365
TU307971 lncRNA downstream 90886 2958274 ~ 2958568 (+) True G271370
TU307977 lncRNA downstream 98972 2966360 ~ 2966650 (+) True G271376
TU307979 lncRNA downstream 102684 2970072 ~ 2970283 (+) True G271378
CI01000066_02808136_02808643.mRNA mRNA upstream 22945 2806997 ~ 2808680 (+) True CI01000066_02808136_02808643
CI01000066_02698232_02698587.mRNA mRNA upstream 132755 2698232 ~ 2698870 (+) True CI01000066_02698232_02698587
CI01000066_02644148_02648505.mRNA mRNA upstream 182520 2644086 ~ 2649105 (+) True CI01000066_02644148_02648505
CI01000066_02636488_02638384.mRNA mRNA upstream 193159 2636379 ~ 2638466 (+) False CI01000066_02636488_02638384
CI01000066_02623527_02632720.mRNA mRNA upstream 198870 2623527 ~ 2632755 (+) True CI01000066_02623527_02632720
CI01000066_02977587_02982602.mRNA mRNA downstream 108259 2975647 ~ 2982870 (+) False CI01000066_02977587_02982602
CI01000066_03011532_03035612.mRNA mRNA downstream 144027 3011415 ~ 3037266 (+) True CI01000066_03011532_03035612
CI01000066_03148145_03156040.mRNA mRNA downstream 280757 3148145 ~ 3156468 (+) True CI01000066_03148145_03156040
CI01000066_03174704_03185343.mRNA mRNA downstream 307316 3174704 ~ 3185343 (+) True CI01000066_03174704_03185343
CI01000066_03195286_03201328.mRNA mRNA downstream 327898 3195286 ~ 3201672 (+) True CI01000066_03195286_03201328
TU307682 other upstream 392456 2430710 ~ 2439169 (+) True G271105
TU307667 other upstream 524605 2306852 ~ 2307020 (+) True G271092
TU307673 other upstream 552065 2269169 ~ 2279560 (+) True G271097
TU307529 other upstream 846611 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307522 other upstream 983873 1844452 ~ 1847752 (+) True G270973
TU308039 other downstream 345616 3213004 ~ 3213245 (+) True G271433
TU308049 other downstream 479405 3346793 ~ 3353514 (+) True G271443

Expression Profile