RNA id: TU308710


Basic Information

Item Value
RNA id TU308710
length 20
lncRNA type sense_over
GC content 0.52
exon number 1
gene id G272028
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2936019 ~ 2936038 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCATCCTGTTTTAAACAGACCAGCGACCAAAGCACCAGCGGCCGAGAAAAAAGAACGTCCAACCAGCACCATGAGCGAAGCGTCGAACTACACAGGCGGCTCAGACTACACCACACATCCCAGCAGTCCCACAACCAGACCATCCAGGTCTTCAAAGAAAGTCCACAACTTTGGGAAGAGGTCCAACTCTATCAAGAGGAACCCCAATGCTCCGGTGGTGAAAAACGGATGGCTTTACAAACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308757 lncRNA downstream 69766 2775961 ~ 2858298 (-) True G272075
TU308768 lncRNA downstream 154425 2762148 ~ 2773639 (-) True G272086
TU309088 lncRNA downstream 395684 2530798 ~ 2532380 (-) True G272367
TU308703 lncRNA downstream 401433 2524502 ~ 2526631 (-) True G272021
TU309038 lncRNA downstream 593676 2334178 ~ 2334388 (-) True G272317
TU308743 lncRNA upstream 43426 2979464 ~ 2981352 (-) True G272061
TU308765 lncRNA upstream 45714 2981752 ~ 2982881 (-) True G272083
TU309163 lncRNA upstream 141522 3077560 ~ 3077956 (-) True G272412
TU309168 lncRNA upstream 149177 3085215 ~ 3085603 (-) True G272417
TU309180 lncRNA upstream 177717 3113755 ~ 3113997 (-) True G272428
CI01000066_02874325_02887004.mRNA mRNA downstream 40731 2874061 ~ 2887333 (-) True CI01000066_02874325_02887004
CI01000066_02709190_02806338.mRNA mRNA downstream 121726 2709190 ~ 2806338 (-) True CI01000066_02709190_02806338
CI01000066_02652332_02680009.mRNA mRNA downstream 248024 2651327 ~ 2680040 (-) True CI01000066_02652332_02680009
CI01000066_02613320_02623007.mRNA mRNA downstream 305057 2613260 ~ 2623007 (-) True CI01000066_02613320_02623007
CI01000066_02548050_02596039.mRNA mRNA downstream 331645 2547740 ~ 2596419 (-) True CI01000066_02548050_02596039
CI01000066_03044933_03045997.mRNA mRNA upstream 108298 3044336 ~ 3045997 (-) True CI01000066_03044933_03045997
CI01000066_03158972_03165320.mRNA mRNA upstream 222278 3158316 ~ 3165320 (-) True CI01000066_03158972_03165320
CI01000066_03203296_03203476.mRNA mRNA upstream 267085 3203123 ~ 3203476 (-) True CI01000066_03203296_03203476
CI01000066_03439936_03446824.mRNA mRNA upstream 503641 3439679 ~ 3448858 (-) False CI01000066_03439936_03446824
CI01000066_03454386_03455995.mRNA mRNA upstream 518292 3454330 ~ 3456166 (-) True CI01000066_03454386_03455995
TU308919 other downstream 942836 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 1079205 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 1103361 1824590 ~ 1824703 (-) True G271984

Expression Profile