RNA id: CI01000066_03439936_03446824.mRNA


Basic Information

Item Value
RNA id CI01000066_03439936_03446824.mRNA
length 3386
RNA type mRNA
GC content 0.38
exon number 3
gene id CI01000066_03439936_03446824
representative False

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3439679 ~ 3448858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCATCTGCTCACAGGTAAGACCGAACTGACTTTACTACTTCTGTTCACTACCTTCAGACCCCAGACAAAGCTGAATATTTTCAACCTTTAAATAATATGTTGTTTTCTCAAGTCAGCATACAGACGAAGGAAATACTGTACATATTTGAAGGTGTTTCGAAAAAGAATACAAGCTGATTTTCATTTCTTCAGATCACATGAACGAGATTCAGACCATTTGATAAAATTTCAGATTCTGGTTTACAATATGCAAAGAACTGCTCTGGTGTTTCTATCTGCCCTGCTCATATTCTGGGGTGAGTATTAAACCCTGCTTATATCATATGTTGCTGAGCAAATCTGCAAAAGAAAACAAAATTCAGCTGCTTTGCTTGTGAAATGTAATAGTATTTTTTTCATGTTAATGACATTCTCTGTGTAATTAAATTGTGCATGGATCGCGGAACCGGGGGGGCCGCCCGGGCCTGGGGCCGGGTAACTTTTGAGGTCTGGTACAAATATGATATAGAAAAATACATAGGGTACAGGTCCATATGCATGCACGCTGCCGCTGATCCATCTCTGAAACAGCTTCACAGTGTTTTCAGCTGACTGCTATTGCAAACATACGAAATATTGGGCTAAAAGTTTATAGTCAGCATATAAACATAAATATCGTGGCATTCGCAATCAAAATGAGTAAATTACCTTTGAATCCAATAGCCACGGCTCGTCTGTAGGGGCAAGTTGGGCAAATCCCCACCTAAATATTCATTCAAACATGTATATAAGCTGAAACAATAGCCTAATAAATTGTAAATGTGTTCAACATTATGCAACATATTTTTCGGATTTTCTTGACTATTTTAAGACGTAAAGTGAGCAGGATATTACAATTTAACGTATGTCTCCGGCAGGCAAGTATTATGATAAGCGGCAGTCGGTCCTTAGCTCTACAGCGCCCCACAATATTACAATGTAAATCTGTGGTGAAAAATGGAACTGCAGCGCGCTGTAATTGTGAGCCATTGGGGCAGATTTCAGACTGTCCCGCTTATTTTCACAGTTGTTTGGTCTTTTCGATTTTTGAAAAACTTTACATATTCTAAATAAACTTTAAAGGCTGTTTGGAAATGAGCAAAATTGGGTTTAGAGTCATTCTTTTTTTTTTTTTTTTTGATTAATACACAATTTTCCAAATAACAAAAACAAATCGAAAAAATAAGCCTTTATATTTGTCTTTTTGGAAAAGTCGTATTCATTTGAATGAAATATGTTTCCCTTATTTGAGTGGGAACATTTCTGGGTAGTTCTCGATATTGTTAAACAAATAAAACTGACAATTTTTAATATTTTAAAACAACGTGTGCCGTGTGTGTCAATCAACATTACAGCGCCACCCTCAGGCTGAATAACGCAACGTCTGCCAAAAGTGTTCTCTGTGTGTTCAGCGATTAGAATATAAAGCATGCAAAAATTGTTTAATTGCCCTACCTATTTACAGTCAGGAGCTGCTACTGGAAACTAATGTTACTCTTGATATAAAGATTGTATATTGATGAAATATAACTAGCTATATGATGAAATTCGTTCAAAAATTCTGAATGAAACAAGTCTTCATTCATTAATTTCAAAGGCTTTTACATAATTCATTTAAATCAATAAATATTTTAATAGACTCATTTATAACGTTTATAGACATTTATAAATCGATTCATTTATAACATTAAAAGAACATTTTGTCAGAACCCATTATTTTGTTTGGTTGTCTGTTTTGTTTTCAGAATCCTGGGAGAACCGTGATCTCTGTCTCTAAAAAAAAAAATACAGATTATCCAGTCAAAAATTAAGCTTAAAAGAAAATATAATATATGTGGCATCCAATTTATAGTAGGTCACCATTAGCACTAATATTAAAAAGTATTACAGACTAGGATGTAAAATGTACAATACAGACAATAAAGTTTTTATGTAGCCTACATTAACAATGATTTGTGGCAATTAAAATGCATTATAATGGAGGATTATGAAAAGTTTTTTTCTTATTTAAAACATGGCTCTTCTCATCCAATCTGCGAAGTTCTGCAAACCACGCCCCTTTATCACCTCTGACCCCCCCCCCCTTCTTTCGGTACGTTCCGCGATCCATGAAATTGTGCATAGCACAAGTAAAAATGATTTTATTATCAAGGTCCTGCACAGGTCTATAATGTCCATATTAAAGATCATATTTCACATAAACACATGTGTAGGGACCTGGGAGGCGGCTGTGGATTATTGCAACAGTCATGACAATACAACTGGACTACTGACCATTCATTCTCAGAGTGATCAGATAGAAATAGAGCGAGAGCTAAAAAGAAAGAATATCTCCGGGCCAATGTGGGTGGGGCTTAGACAGAGTCGACTTTTCGGATTCTGGATTTGGATCAACAGGGTTACTGTGGGACCCTGGACCAACTGGAAAAGAGGAAGTCAACCAGAACATCTGATATCCCACCACTGCGGTGCCATAGAGGAGCTTGTAGCAACAGATTCAATAGCCTCCGCAGGGCTGCTAAAAGTGAAAAACATAAGACACATGTTGGTAGAACTCACATTAAAATGGGTTGTGCATCAGCAACATGTTTCCCCCTTTACGGCTGGTTACATTCAGTTCCTCTGCCATCATCATCTATACACTCGACCCTTACAGCTCCGACCACATCTGCCCTTGTTACCAAGCAGCAATGTCATCCACATCTCGTTTTTCAATCATCCCCACCTTTCTCCCTCACTCAACACCGAGATGAATGAAATATCACACAATGGAACATGGCAAAACGGGTCGAAGAGTTCGGCTCAGAGATACCTATTCAGCGGGGATCATCAATACACAAGTCAAGAACACGGGCACGTCGGCTCTAACAGCCCTGTGCACTCGGAGACCAAAAGCAGCACCTTCATTAAAACTTCAGCAAAGTGCGTGACTGACGACAAAACGCTCAGCAGATGTGTCATGACTCGCAGTGAGCTCGGAGTGAAAAGGCTCTCGGCTCTTTGTAAATGGAGCCGAACCGCATTGCTGTCCCTCGAGTCTGCCATTAGAGGAAAAATCCCGTTAGGGCTGAAAAGTTTTATGTGCGGAAAATTGCCGTGGGTACTCTGAGGCTCACATTTGACCAGGTCTGGAGTCATTACGATAACGGGCCACTGCTTTTAAAGCAAAACTAGCTTTTAAAAAGATTAAAGTAGCTGATCGTAATCCTGAAAAGAGGTGGAGATTTGAGCAATCCTGATGCTGACATGCACAGCACGCTTATTTTAGCATCATTGAGATACTAGGGTAGTATTTTAAATTACTTTTTATTTTTATATTTTCCATTTTCATTTGTTTCCATTCCATTCATAATTTACATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309232 lncRNA downstream 125390 3243268 ~ 3314289 (-) True G272472
TU309219 lncRNA downstream 223605 3214796 ~ 3216074 (-) True G272462
TU309183 lncRNA downstream 318773 3120464 ~ 3120906 (-) True G272431
TU309180 lncRNA downstream 325682 3113755 ~ 3113997 (-) True G272428
TU309168 lncRNA downstream 354076 3085215 ~ 3085603 (-) True G272417
TU309327 lncRNA upstream 19035 3467893 ~ 3567133 (-) True G272559
TU309329 lncRNA upstream 132922 3581780 ~ 3582119 (-) True G272561
TU309384 lncRNA upstream 138698 3587556 ~ 3587801 (-) True G272613
TU309385 lncRNA upstream 139470 3588328 ~ 3588529 (-) True G272614
TU309386 lncRNA upstream 140137 3588995 ~ 3589368 (-) True G272615
CI01000066_03203296_03203476.mRNA mRNA downstream 236203 3203123 ~ 3203476 (-) True CI01000066_03203296_03203476
CI01000066_03158972_03165320.mRNA mRNA downstream 274359 3158316 ~ 3165320 (-) True CI01000066_03158972_03165320
CI01000066_03044933_03045997.mRNA mRNA downstream 393682 3044336 ~ 3045997 (-) True CI01000066_03044933_03045997
CI01000066_02891474_02931062.mRNA mRNA downstream 508617 2890829 ~ 2931062 (-) False CI01000066_02891474_02931062
CI01000066_02874325_02887004.mRNA mRNA downstream 552346 2874061 ~ 2887333 (-) True CI01000066_02874325_02887004
CI01000066_03454386_03455995.mRNA mRNA upstream 5472 3454330 ~ 3456166 (-) True CI01000066_03454386_03455995
CI01000066_03649007_03654018.mRNA mRNA upstream 200074 3648932 ~ 3654018 (-) True CI01000066_03649007_03654018
CI01000066_03655461_03659325.mRNA mRNA upstream 205974 3654832 ~ 3659717 (-) True CI01000066_03655461_03659325
CI01000066_03711890_03717941.mRNA mRNA upstream 262591 3711449 ~ 3717941 (-) True CI01000066_03711890_03717941
TU308919 other downstream 1454451 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 1590820 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 1614976 1824590 ~ 1824703 (-) True G271984

Expression Profile