RNA id: TU306985


Basic Information

Item Value
RNA id TU306985
length 622
lncRNA type read_through
GC content 0.41
exon number 2
gene id G270525
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 63222 ~ 180177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCACACTAGTATGTATTGTGAGTGCACATATAGCCTATTTTTTATTTCAGCAAACAGACTAAAACATTTTGTTAAAAAGCAAGGTCAGCAGAGGGTAGATTTTAATGAACATATCAAGGTAAAACATGTACAGTTTTTAGTGCTGTTGTACTTTATCACTACTGAGCTTCTTATAAAGGATGTTTGTCTCAAAGCAGCTTTACAAAGTGCTGATTTAGAACAGGTTTATTTCCCTTCATACCTGTAAAACACGGTACCTTTGTTCAGATAACAATTAATGCTGAAAGACCCATATTGCACCTGTCTGGTACATGTGCCCAATTTATCATCATAATTCAGGTCTTTGTCCCACACCTCCAGCTTCAGGTTGTCATTTACTTTGCAATTTGGGAAGTTGAACTCTGCAGACCATGTAGGATGAGCAGTATCCTTGATATATTCTGTCTGCCCCCCAAAAGTAGAGCCACACCAGACCTTGACGTATGGATCGGGTTTGTTTCCAGCAGCATCACCGGTGAGGTCCCTGGCATGTAAGCCAAACACCCGAACAGCACTAGCAAAGTCCAGCTGAGACGCCAGCATCAGCACAAGCAGAGACATCAGCCGAAGATCATAAAAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306993 lncRNA upstream 103980 48452 ~ 57697 (+) True G270531
TU307007 lncRNA downstream 4019 184196 ~ 184427 (+) True G270545
TU307015 lncRNA downstream 6032 186209 ~ 186677 (+) False G270546
TU307011 lncRNA downstream 6220 186397 ~ 186677 (+) False G270546
TU307008 lncRNA downstream 6260 186437 ~ 186677 (+) True G270546
TU307018 lncRNA downstream 14509 194686 ~ 196431 (+) True G270547
CI01000066_00151325_00157474.mRNA mRNA upstream 3533 151236 ~ 158144 (+) True CI01000066_00151325_00157474
CI01000066_00109609_00131845.mRNA mRNA upstream 29498 109609 ~ 132179 (+) True CI01000066_00109609_00131845
CI01000066_00063935_00066860.mRNA mRNA upstream 94484 63935 ~ 67193 (+) True CI01000066_00063935_00066860
CI01000066_00043800_00047188.mRNA mRNA upstream 113922 43492 ~ 47755 (+) True CI01000066_00043800_00047188
CI01000066_00019553_00029834.mRNA mRNA upstream 131146 19458 ~ 30531 (+) False CI01000066_00019553_00029834
CI01000066_00273310_00276428.mRNA mRNA downstream 92980 273157 ~ 276498 (+) False CI01000066_00273310_00276428
CI01000066_00300974_00304363.mRNA mRNA downstream 120059 300236 ~ 304408 (+) True CI01000066_00300974_00304363
CI01000066_00344664_00393673.mRNA mRNA downstream 164487 344664 ~ 394325 (+) True CI01000066_00344664_00393673
CI01000066_00400218_00405333.mRNA mRNA downstream 219603 399780 ~ 405603 (+) True CI01000066_00400218_00405333
CI01000066_00419486_00436877.mRNA mRNA downstream 238741 418918 ~ 437551 (+) True CI01000066_00419486_00436877
TU306975 other upstream 141404 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307016 other downstream 4351 184528 ~ 185643 (+) False G270546
TU307009 other downstream 4693 184870 ~ 185643 (+) False G270546
TU307010 other downstream 4693 184870 ~ 186677 (+) False G270546
TU307522 other downstream 1664275 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 1778929 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697

Expression Profile