RNA id: TU307016


Basic Information

Item Value
RNA id TU307016
length 1116
RNA type TUCP
GC content 0.40
exon number 1
gene id G270546
representative False

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 184528 ~ 186677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTGGGGGTTACCATTGTGGTGAAGTGTAGAGCATGTGTTTGGGCTGAGGACCTGCTAACAACAATTAAAGTAGTTTTAATAATAAAAAAAACAACTACTTTGGGCATGCCATCCATCTTCTGGCTTGAACTTAATAGTTTTGGACAAAATTAAGATTGTTAACCTGATTCAACGAAATGGCATTGAATTTACAACCTGAATTCCAGAAATGTTGGGACGTTTTTTTAAATTTGAATAAAATGAAAACTAAAAGACTTTCAAATCACATGAGCCAATATTTTATTCACAATAGAACATAGATAACATAAATGTTTAAACTGAGAAATGTTACACTTTGATGCCTGCTACAGGTCTAAAAAAAGTTGGCACGGGGGTAACAAATGGCTGAAAAAGCAAGAAATTGGGAGAACATCTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGAGCTGTGAAAGAGTGCATAAAAGGATTGTGGAATACTTTAAAAACAATGTTCCTCAACGTCAAATTGCAAAGGCTTTGCAAATCTCATCATCTACAGTGCATAACATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCGTAAGGAACAAGGACGAAGACCTTTTTTGGATGCCTGTGGTCTTCGGGCCCTCAGACGACACTGCATCACTCATCAGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTTCAGAAACCACTGTCGGTAAACACAATCCGCCGTGCCATCTGCAGATGCCAACTAAAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGATGCGCCGTCGTGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGCGTTCTATGGTCAGACGAGTCCAAATTTGACATTCTTGTTGGAAATCACGGACGCCGTGTCCTCCGGGCTAAAGAGGAGGGAGACCTTCCAGCGTGTTATCAGCGTTCAGTTCAAAAGCCAGCATCTCTGATGGTATGGGAGTCCATAAGTGCATACGGTATGGACAGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307007 lncRNA upstream 101 184196 ~ 184427 (+) True G270545
TU306987 lncRNA upstream 4351 142902 ~ 180177 (+) False G270525
TU306985 lncRNA upstream 4351 161677 ~ 180177 (+) True G270525
TU306986 lncRNA upstream 19800 63222 ~ 164728 (+) False G270525
TU306993 lncRNA upstream 126831 48452 ~ 57697 (+) True G270531
TU307015 lncRNA downstream 566 186209 ~ 186677 (+) False G270546
TU307011 lncRNA downstream 754 186397 ~ 186677 (+) False G270546
TU307008 lncRNA downstream 794 186437 ~ 186677 (+) True G270546
TU307018 lncRNA downstream 9043 194686 ~ 196431 (+) True G270547
TU307046 lncRNA downstream 39491 225134 ~ 275259 (+) True G270567
CI01000066_00151325_00157474.mRNA mRNA upstream 26384 151236 ~ 158144 (+) True CI01000066_00151325_00157474
CI01000066_00109609_00131845.mRNA mRNA upstream 52349 109609 ~ 132179 (+) True CI01000066_00109609_00131845
CI01000066_00063935_00066860.mRNA mRNA upstream 117335 63935 ~ 67193 (+) True CI01000066_00063935_00066860
CI01000066_00043800_00047188.mRNA mRNA upstream 136773 43492 ~ 47755 (+) True CI01000066_00043800_00047188
CI01000066_00019553_00029834.mRNA mRNA upstream 153997 19458 ~ 30531 (+) False CI01000066_00019553_00029834
CI01000066_00273310_00276428.mRNA mRNA downstream 87514 273157 ~ 276498 (+) False CI01000066_00273310_00276428
CI01000066_00300974_00304363.mRNA mRNA downstream 114593 300236 ~ 304408 (+) True CI01000066_00300974_00304363
CI01000066_00344664_00393673.mRNA mRNA downstream 159021 344664 ~ 394325 (+) True CI01000066_00344664_00393673
CI01000066_00400218_00405333.mRNA mRNA downstream 214137 399780 ~ 405603 (+) True CI01000066_00400218_00405333
CI01000066_00419486_00436877.mRNA mRNA downstream 233275 418918 ~ 437551 (+) True CI01000066_00419486_00436877
TU306975 other upstream 164255 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 1658809 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 1773463 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 2083526 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 2116567 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 2245067 2430710 ~ 2439169 (+) True G271105

Expression Profile