RNA id: TU307015


Basic Information

Item Value
RNA id TU307015
length 469
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G270546
representative False

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 184528 ~ 186677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTTATTCAAATTTAAAAAACATCCCAACACTTCCGGAATTCGGGTTGTAAATTCAATGCCATTTCATTGAAACAGGTTAACAATCTTAATTTTGTCCAAAACTATTAAGTTCAATTATCCTAAATTAATATCAAACAAACATTAAAACAAATAATCCAGTGTAATTGGTTAGTTTATTTAGTGAATGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAACGTCCCAACATTTCTGGAATTCGGGTTGTATATGACATATCAAACGTGGGCTCAAATAACATTTTGACATGGACCACAGATAATGTTGTCTAGTAGCTCATGAGAGACATAATAAAGTAACTATGAACAGCTCCAGTCAGAACATCGCGGGTTGCCATCCCTTAAAGGGATAGTTCACCCAAAAATGAAAATTATTCCATGATTTACTCATCCTCAAGCCATCCTAGGTGTTTATGACTATCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307007 lncRNA upstream 1782 184196 ~ 184427 (+) True G270545
TU306987 lncRNA upstream 6032 142902 ~ 180177 (+) False G270525
TU306985 lncRNA upstream 6032 161677 ~ 180177 (+) True G270525
TU306986 lncRNA upstream 21481 63222 ~ 164728 (+) False G270525
TU306993 lncRNA upstream 128512 48452 ~ 57697 (+) True G270531
TU307018 lncRNA downstream 8009 194686 ~ 196431 (+) True G270547
TU307046 lncRNA downstream 38457 225134 ~ 275259 (+) True G270567
TU307065 lncRNA downstream 65396 252073 ~ 252391 (+) True G270586
TU307066 lncRNA downstream 66977 253654 ~ 257325 (+) True G270587
TU307073 lncRNA downstream 79199 265876 ~ 267641 (+) True G270594
CI01000066_00151325_00157474.mRNA mRNA upstream 28065 151236 ~ 158144 (+) True CI01000066_00151325_00157474
CI01000066_00109609_00131845.mRNA mRNA upstream 54030 109609 ~ 132179 (+) True CI01000066_00109609_00131845
CI01000066_00063935_00066860.mRNA mRNA upstream 119016 63935 ~ 67193 (+) True CI01000066_00063935_00066860
CI01000066_00043800_00047188.mRNA mRNA upstream 138454 43492 ~ 47755 (+) True CI01000066_00043800_00047188
CI01000066_00019553_00029834.mRNA mRNA upstream 155678 19458 ~ 30531 (+) False CI01000066_00019553_00029834
CI01000066_00273310_00276428.mRNA mRNA downstream 86480 273157 ~ 276498 (+) False CI01000066_00273310_00276428
CI01000066_00300974_00304363.mRNA mRNA downstream 113559 300236 ~ 304408 (+) True CI01000066_00300974_00304363
CI01000066_00344664_00393673.mRNA mRNA downstream 157987 344664 ~ 394325 (+) True CI01000066_00344664_00393673
CI01000066_00400218_00405333.mRNA mRNA downstream 213103 399780 ~ 405603 (+) True CI01000066_00400218_00405333
CI01000066_00419486_00436877.mRNA mRNA downstream 232241 418918 ~ 437551 (+) True CI01000066_00419486_00436877
TU307016 other upstream 566 184528 ~ 185643 (+) False G270546
TU307009 other upstream 566 184870 ~ 185643 (+) False G270546
TU306975 other upstream 165936 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 1657775 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 1772429 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 2082492 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 2115533 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 2244033 2430710 ~ 2439169 (+) True G271105

Expression Profile