RNA id: TU307130


Basic Information

Item Value
RNA id TU307130
length 231
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G270633
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 534277 ~ 534507 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCATCAATTCTTGGTCAAGATCTTGTATTGATGATGCAAGAGGTGAGCACTCTGTAAAGTCTCCTCCAGCACATCCCAAAGACTTTCAATGATTTAAGGTCTGGATTCAGAGATGCCAATTCATGTGGGAAAATGATTCTTCATGCTCCCTCCCAACCATTCTTTCACAATTTGAGCCTGATGAATCTTGGCTTTGTCATTATGGAGTATGCATGATGTGTCTTCCTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307084 lncRNA upstream 256615 277279 ~ 277662 (+) True G270603
TU307083 lncRNA upstream 257148 276906 ~ 277129 (+) True G270602
TU307080 lncRNA upstream 258133 275941 ~ 276144 (+) True CI01000066_00273310_00276428
TU307073 lncRNA upstream 266636 265876 ~ 267641 (+) True G270594
TU307066 lncRNA upstream 276952 253654 ~ 257325 (+) True G270587
TU307122 lncRNA downstream 34670 569177 ~ 577204 (+) True G270625
TU307146 lncRNA downstream 102974 637481 ~ 643950 (+) True G270648
TU307148 lncRNA downstream 136686 671193 ~ 671425 (+) True G270650
TU307144 lncRNA downstream 139321 673828 ~ 678102 (+) True G270646
TU307173 lncRNA downstream 220551 755058 ~ 755386 (+) True G270675
CI01000066_00512961_00520396.mRNA mRNA upstream 13736 512272 ~ 520541 (+) True CI01000066_00512961_00520396
CI01000066_00489175_00503984.mRNA mRNA upstream 30261 489044 ~ 504016 (+) True CI01000066_00489175_00503984
CI01000066_00451123_00488660.mRNA mRNA upstream 45565 449063 ~ 488712 (+) True CI01000066_00451123_00488660
CI01000066_00419486_00436877.mRNA mRNA upstream 96726 418918 ~ 437551 (+) True CI01000066_00419486_00436877
CI01000066_00400218_00405333.mRNA mRNA upstream 128674 399780 ~ 405603 (+) True CI01000066_00400218_00405333
CI01000066_00549586_00551630.mRNA mRNA downstream 14854 549361 ~ 551735 (+) True CI01000066_00549586_00551630
CI01000066_00620105_00632826.mRNA mRNA downstream 85598 620105 ~ 632826 (+) True CI01000066_00620105_00632826
CI01000066_00661106_00665703.mRNA mRNA downstream 126599 661106 ~ 665915 (+) True CI01000066_00661106_00665703
CI01000066_00738687_00750408.mRNA mRNA downstream 204180 738687 ~ 750740 (+) True CI01000066_00738687_00750408
CI01000066_00915548_00922666.mRNA mRNA downstream 381041 915548 ~ 923234 (+) True CI01000066_00915548_00922666
TU307010 other upstream 347600 184870 ~ 186677 (+) False G270546
TU307016 other upstream 348634 184528 ~ 185643 (+) False G270546
TU307009 other upstream 348634 184870 ~ 185643 (+) False G270546
TU306975 other upstream 514004 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 1309945 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 1424599 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 1734662 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 1767703 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 1896203 2430710 ~ 2439169 (+) True G271105

Expression Profile