RNA id: TU307148


Basic Information

Item Value
RNA id TU307148
length 233
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G270650
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 671193 ~ 671425 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATCAGTCAGCCTTGCATTTAGTTCAGGCTTCTCAGCTAGTGCTCAACGAAGATGACTCCATAGCACCACCTAACGTCTAACCAGCAGTATTACCGGTGTAATGGGTCTGAATGCGGATACAGCATCAATAATGACATGGTGGCACATTATTCAAATAGATCAGCACAAAAAAAAAAAAAAAAAACACAAGGATAACATGTTCACATATGCACACACATGCTTACTTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307146 lncRNA upstream 27243 637481 ~ 643950 (+) True G270648
TU307122 lncRNA upstream 93989 569177 ~ 577204 (+) True G270625
TU307130 lncRNA upstream 136686 534277 ~ 534507 (+) True G270633
TU307084 lncRNA upstream 393531 277279 ~ 277662 (+) True G270603
TU307083 lncRNA upstream 394064 276906 ~ 277129 (+) True G270602
TU307144 lncRNA downstream 2403 673828 ~ 678102 (+) True G270646
TU307173 lncRNA downstream 83633 755058 ~ 755386 (+) True G270675
TU307193 lncRNA downstream 115824 787249 ~ 828540 (+) True G270695
TU307316 lncRNA downstream 336621 1008046 ~ 1008810 (+) True G270803
TU307334 lncRNA downstream 350268 1021693 ~ 1021905 (+) True CI01000066_01021163_01021546
CI01000066_00661106_00665703.mRNA mRNA upstream 5278 661106 ~ 665915 (+) True CI01000066_00661106_00665703
CI01000066_00620105_00632826.mRNA mRNA upstream 38367 620105 ~ 632826 (+) True CI01000066_00620105_00632826
CI01000066_00549586_00551630.mRNA mRNA upstream 119458 549361 ~ 551735 (+) True CI01000066_00549586_00551630
CI01000066_00512961_00520396.mRNA mRNA upstream 150652 512272 ~ 520541 (+) True CI01000066_00512961_00520396
CI01000066_00489175_00503984.mRNA mRNA upstream 167177 489044 ~ 504016 (+) True CI01000066_00489175_00503984
CI01000066_00738687_00750408.mRNA mRNA downstream 67262 738687 ~ 750740 (+) True CI01000066_00738687_00750408
CI01000066_00915548_00922666.mRNA mRNA downstream 244123 915548 ~ 923234 (+) True CI01000066_00915548_00922666
CI01000066_00925751_00935641.mRNA mRNA downstream 254326 925751 ~ 935852 (+) True CI01000066_00925751_00935641
CI01000066_00941480_00966469.mRNA mRNA downstream 270055 941480 ~ 966471 (+) True CI01000066_00941480_00966469
CI01000066_01015249_01016975.mRNA mRNA downstream 342344 1013769 ~ 1017334 (+) True CI01000066_01015249_01016975
TU307010 other upstream 484516 184870 ~ 186677 (+) False G270546
TU307016 other upstream 485550 184528 ~ 185643 (+) False G270546
TU307009 other upstream 485550 184870 ~ 185643 (+) False G270546
TU306975 other upstream 650920 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 1173027 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 1287681 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 1597744 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 1630785 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 1759285 2430710 ~ 2439169 (+) True G271105

Expression Profile