RNA id: TU307144


Basic Information

Item Value
RNA id TU307144
length 3631
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G270646
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 673828 ~ 678102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAACATGACGCTGGAAGCAGTGGCCACAACACACTTTTAGACCTGTTTTAATGGCATGAGAGTACAGATCGTGCAGGTGAAAGACTCAACAACACATTTTCCAGCCTAACAGCAACCTCAAGAGGCCTACAATGTGCAGGAAGTGCAGAAAGCAAGTGTCTCGCGACTTGTTTGATAGAGAATGTCTTTAGACTGCGCACCTACCCAACAGAAGCAGAGTTCAGGGACATAGACAGGTAATGCTTGATGACACTGCTTGTTTCGAATACCTTGTACACATGGAAATATGAATATGAAAAGCCATTCAAGAATCATCACACCGGTATAGATTGTTTGACATTCCGACATTCTTCAATAATATCTTCAAAATATCTTCTTTTGTGTTCAGCAGAAGAAAAGAAATTTATACAGGTTTGTAACAACTTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTATACTATATTTATTATACTATACTGTATTTTTTTTTAGGATTACTGATTTACAATTGTAAATATATACAATTTAATGCAGACTCAATGTTTTAAATTCAGATTTTAATCAGAAATGTTACTTTTTCTAAAATTATTATTTTTATTTATTAAAAAAAAAAGGGTTTAATTCAGAAATGTTACCTTTTCTAAAATTACTATTATTCTAATTTTTTTTTTTTTTAAATTGGGTTTATGAGTTCAGTGGTTAACTATTGCTAAAGAGCATGTTGTTGTATGAAGTCGTCGTGGTCCAGTGGTTAATGCACAGGCTATGATGCGGGAGATCCGAGTTCAAACCTGCTCGAGAGCAGTGTGAAAATTTTGGATTTTTTTGGATTTTTTTCCAAAAAAAGGCCAAAAATTAAAAAAAAAAAAAATTCTTTTGGTTTTTTTTCCTCTCTCTGCAGGTATCTCTCAGCCCAGCCCGCTTCGCCCTTTTCTGCCTGTTCCGTTCCAGCCTGTCTTTCGCTCATGTTCTGGTTGTTTAACCGCCACAGTTTGTATCTTTCGCTCCTTTGGTTTACCGCCCCAAGTAACCATGCCATCCAGGCACTGTCGGTTGCCAGCCGACTTTTTTCTTTTGTGTCCAACCGTCTCTCTCTTTGGTTTACCGCCCCAAGTAACCATGCCATCCAGACACTGTCGGTTGCCAGCCGACATTCTTTCTTTGGTTTACTGCCCCAGGTAACCATGCCATCCAGGCACTGTCGGTTGCCAGCCGACTCTGTTGAGGTGGGGTTTGAACCCATACCTCTATGATCATCTTGTCCGCAACTAACGTGTGTTTAGCCACTAGGACCATCGTGGCTTTCACACCGAGAGTTGACATTTGGGCCACTTTGTCGGATATAGTGTAGTTTACAACAATTTAATGTAAGCAAGAGGTAGACTCGAACCCGGGTCTCCAAGATTAAAACGCAACATTTTATAAGCTGAGCTACAGAGTCCAGCGAGATTTTCGATGCTTTGGGCGAGGCTTTATTGATAGGTTTGTTTTATTAGATAAAAAAGCATTAAGTATTGTTGGATTCGAACCTACACCTCTAGCGTTGGCTTTTACTTCGAAAGCATACGCTTAACCACTAGCGCCACTGTGGCTTTCATATTGAGTAGTGGCGTTTATGCCACTACTCAATATAGATATAATGACAAAAATGTAACAAGCAATAGGTGGACTTGAACCCGGGTCTCCAAGATTAAAACGCAACTCTTTATGATTTGCGCCACAAAGTCTGACAGTTTCGTGGTTGTTTTGGACGGGGTTTTATTGAGAGGTTTGTTTTATAAGATAACAAACATAAGTGATTGAAGGATTCGAACCTACATCTCTATTGTAGACTTTTACTCAGAAAACGCACGCTTAACCACTTGCACCACTGTGGCCTTCACGATAAGCGTTGGCATTTAGGATGCTTTGTTAGATATGATGACAAAATATGTAACGTAAACAATAGGTGGATTCGAACCCGGGTCTCCAAGATAAATATGCAACACTTTATGACCTGTGCCACCAAGTCTGGCGAATTTATGATGGTTTTGGACGGGGTTTTATTGAGAGGTTTGTTTTATAAGATGACAATTATAAGCGATTGAAGGATTTGAACCTACAAAAATGTAACGTAAGCAATAGGTGGATTCGAACCCTGGTCTCTAAGATTAAAACGCAACACTTTAAACACTGCGCCACCGAGTCTGGTGATTTCATGTTTTGTTTGGACAGGGTTTTATTGAAAGCTTTGTTTTATAAGATGATAAGTATAAGCAATCAAAAGATTCGAACCTACGTCTCTATTATAGCCTTTTATTCAGGAAGCACGCACTTAACCACTTGCACCACTGTGGCCTTCACGTTAATTGTTGGCGTTTAGGGCGCTTTGTTAGATATAACGACAAAAATGTAACGTAAGCAATAGGTGGATTCGAACCCCGATCTCCAAGATAAAAACACAACACTTTATAAACTGTGCCATAGAGTCTGGCAAGTTTGTGTTAGTTTTGGGCAGGGTTTTATTGAGAGCTTTGTTTTAAAACTTAAAAACATAAGCAACTGAGGGATTAACTTAGTTAAATTCGAAAAAAAAACTTAAGCTTTACGCCACTGAGTTTGACACAAGTATTTTGTTTTGAAAGCTTTTATATTGTCTTGTCACATGAAAACTTGAGCCAAAGGTGTGACAGCTTGTAAATTTGTAAATGTCTTTGTTTCAAAACCGCTTTTTTTTTTTTTTGAGTTTTGTCTAAGACTTTTCAATAAAAAAAGATTGAAGATGAGATAAGGTCATTTTTCCCCAAAGTTAAGCAACAAGTTGTCAATAAAGCAAATCACCAAATCTGAAAAGAAAATAATATAGATATTTGCTGAATTGATACTTGCTTGCTTTAAAACAGTTGTACAAACCCCATATCTTAATACTAAACAGCACTGAGAATGTTTTTAAACAGATTTCATGTCTCATGGCGCTCATGTTTTTAAAACCAAAGATGATTCAAAAGAATCAAGATTCATTGTTAATGAATCAAGATTCGAAACAGTGTGCAGGATACTCATTTCACACATAAACCACAATGATGGTGACAAGTAAATCACTAAGGGTACAACTGTACTCAAACATCTCATCACATGACACAACCCAACAAAAACAACAACTTAAGTGCAAACAATGCAATAAACAGTAAAAATTTTCACTAATATACATTTTAGTCATGCCACAATGCATGCTGGGAAAAATCCAACACCCAGCACCACAGAAATTACTTTTTTTTTTTTTTTATTGTATTCATTGATGAATTAAACTGTATAACTGACTGATTGTTTCATTTGCTTTCAGGTTCTTGGATGCTTCATTTAGATGAACATCACTGGGATGCATATGCTGATGTAATTCCCAATACCTCTTCATGAGTTTTCTGTCAACACTCAAAAATGCATCAACTGCACGCCACCCAGTGGTGTAATGGTGTAATGGTAAGGAGTGAATAAATCTGTGAACGAATTTGAACAAATCTTTTTAGTGAATACAAGAGAACGATTCAAGTAAAATGAATCAAAATCAACACCACTAATATTTTAGCATGCAGTGCTTGTGAACCAAAACAAATTACTTGTGTATGTGAGCATACTTGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307148 lncRNA upstream 2403 671193 ~ 671425 (+) True G270650
TU307146 lncRNA upstream 29878 637481 ~ 643950 (+) True G270648
TU307122 lncRNA upstream 96624 569177 ~ 577204 (+) True G270625
TU307130 lncRNA upstream 139321 534277 ~ 534507 (+) True G270633
TU307084 lncRNA upstream 396166 277279 ~ 277662 (+) True G270603
TU307173 lncRNA downstream 76956 755058 ~ 755386 (+) True G270675
TU307193 lncRNA downstream 109147 787249 ~ 828540 (+) True G270695
TU307316 lncRNA downstream 329944 1008046 ~ 1008810 (+) True G270803
TU307334 lncRNA downstream 343591 1021693 ~ 1021905 (+) True CI01000066_01021163_01021546
TU307314 lncRNA downstream 378907 1057009 ~ 1058689 (+) True G270801
CI01000066_00661106_00665703.mRNA mRNA upstream 7913 661106 ~ 665915 (+) True CI01000066_00661106_00665703
CI01000066_00620105_00632826.mRNA mRNA upstream 41002 620105 ~ 632826 (+) True CI01000066_00620105_00632826
CI01000066_00549586_00551630.mRNA mRNA upstream 122093 549361 ~ 551735 (+) True CI01000066_00549586_00551630
CI01000066_00512961_00520396.mRNA mRNA upstream 153287 512272 ~ 520541 (+) True CI01000066_00512961_00520396
CI01000066_00489175_00503984.mRNA mRNA upstream 169812 489044 ~ 504016 (+) True CI01000066_00489175_00503984
CI01000066_00738687_00750408.mRNA mRNA downstream 60585 738687 ~ 750740 (+) True CI01000066_00738687_00750408
CI01000066_00915548_00922666.mRNA mRNA downstream 237446 915548 ~ 923234 (+) True CI01000066_00915548_00922666
CI01000066_00925751_00935641.mRNA mRNA downstream 247649 925751 ~ 935852 (+) True CI01000066_00925751_00935641
CI01000066_00941480_00966469.mRNA mRNA downstream 263378 941480 ~ 966471 (+) True CI01000066_00941480_00966469
CI01000066_01015249_01016975.mRNA mRNA downstream 335667 1013769 ~ 1017334 (+) True CI01000066_01015249_01016975
TU307010 other upstream 487151 184870 ~ 186677 (+) False G270546
TU307016 other upstream 488185 184528 ~ 185643 (+) False G270546
TU307009 other upstream 488185 184870 ~ 185643 (+) False G270546
TU306975 other upstream 653555 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 1166350 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 1281004 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 1591067 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 1624108 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 1752608 2430710 ~ 2439169 (+) True G271105

Expression Profile