RNA id: TU307408


Basic Information

Item Value
RNA id TU307408
length 212
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G270877
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1399573 ~ 1399784 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTAGCATCACGTGACCTCAGGTTTCTTCTACCGCAGTTGGGTTTTTGCGTTTCTCTGTGCCGTTGCATTGGCTGGATCAAACAGATGATTTGTCCACAGTTGGACGTGGAAACCGATATCAACAATATCGACAACCAGCTGTGCTGCTCTAGCTTCAGTATTCCTGGCATTCTGCCACACGCTGTAAATCAATGCGGATCATACAGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307387 lncRNA upstream 44183 1354115 ~ 1355390 (+) False G270864
TU307388 lncRNA upstream 44183 1354115 ~ 1355390 (+) False G270864
TU307390 lncRNA upstream 44605 1354115 ~ 1354968 (+) False G270864
TU307394 lncRNA upstream 44605 1354115 ~ 1354968 (+) True G270864
TU307374 lncRNA upstream 75548 1323495 ~ 1324025 (+) True G270855
TU307229 lncRNA downstream 4991 1404775 ~ 1407665 (+) False G270720
TU307230 lncRNA downstream 4991 1404775 ~ 1408011 (+) False G270720
TU307231 lncRNA downstream 4991 1404775 ~ 1407591 (+) False G270720
TU307232 lncRNA downstream 4991 1404775 ~ 1407867 (+) True G270720
TU307446 lncRNA downstream 273630 1673414 ~ 1687198 (+) True G270902
CI01000066_01358866_01360100.mRNA mRNA upstream 39080 1358866 ~ 1360493 (+) True CI01000066_01358866_01360100
CI01000066_01339972_01347463.mRNA mRNA upstream 52110 1339972 ~ 1347463 (+) True CI01000066_01339972_01347463
CI01000066_01334756_01335057.mRNA mRNA upstream 64047 1334756 ~ 1335526 (+) True CI01000066_01334756_01335057
CI01000066_01245954_01257380.mRNA mRNA upstream 142193 1245954 ~ 1257380 (+) True CI01000066_01245954_01257380
CI01000066_01236972_01244870.mRNA mRNA upstream 154461 1236972 ~ 1245112 (+) True CI01000066_01236972_01244870
CI01000066_01433027_01434982.mRNA mRNA downstream 33243 1433027 ~ 1435523 (+) True CI01000066_01433027_01434982
CI01000066_01435756_01447201.mRNA mRNA downstream 35972 1435756 ~ 1448712 (+) True CI01000066_01435756_01447201
CI01000066_01453501_01454593.mRNA mRNA downstream 53717 1453501 ~ 1454967 (+) True CI01000066_01453501_01454593
CI01000066_01468657_01476221.mRNA mRNA downstream 68873 1468657 ~ 1476254 (+) True CI01000066_01468657_01476221
CI01000066_01479854_01525318.mRNA mRNA downstream 80070 1479854 ~ 1525318 (+) True CI01000066_01479854_01525318
TU307010 other upstream 1212896 184870 ~ 186677 (+) False G270546
TU307016 other upstream 1213930 184528 ~ 185643 (+) False G270546
TU307009 other upstream 1213930 184870 ~ 185643 (+) False G270546
TU306975 other upstream 1379300 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 444668 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 559322 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 869385 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 902426 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 1030926 2430710 ~ 2439169 (+) True G271105

Expression Profile