RNA id: TU308748



Basic Information


Item Value
RNA id TU308748
length 1915
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G272066
representative True

Chromosome Information


Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1808682 ~ 1812113 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCATACCACAAAATATTCTAGGGGCCATGATAGTTTTGTGGAACTTTTTTGGCTGGCAACTTTTAAAAAAAACGCTGGTGGCGAAAGAGTTAACAGAATTTGCTCTAGGAACATGTATTAGAAAGTAAAATGGGTCAGTTTTGATTTCATGCTGACTTTAAACCTTTTTGCATTCGCTGAATGTAAAACTAAATGAAAACCTGATTAATCTTGCTGTGCAGTCTGAAAGTGCAGCTACACATAAGAATAATCAAATGATTATAATTCATATATGTAATTTTAATACACAAGATCTTGTGGAGCATTGATAGCAAACAAATGTCAAATAAAAACTGCAGCATGGAAGATATAAAGGAAATGAGAATATCTAGATTTCTACAGCAGACAGAAATGGATCATTGATGATTACAGACATCACAAATGCCACAAATGAAACAGCACAAACTGTGATTTTGATCTGATCTTTCATTTCTGTGCTGGGATGTTCCTCTGTTTCAGAATGTGGCACAGCCTTTTCTCCCAGAAAAATCTTCTTAAGGAAGAAACCTCACTACTGACCTCCGAGGAGATCCGCTGAGCCGGAGGAAGCACCGGCAGCGGAAGGGGGAGGAGCCAAAGAAACGGCTGCCTCAGCGGCTGTGGTGGTGGGCGTGGCTGAGGAGTTGGAGTCTACGGCAAGGGTTGGGTCAGGAAGGAGAGTCTCTGTGACTGTACCTCCCCAAGATGTGGGAGCAGCTGATGCTCCTCCTGCAGAAGGTCCAGAGGAAGACAACGGGTCCAGATCCAGAAGAGAACTACAGAAGTGAAGCGTGGTTACACTCACTCAGTGGCAGTTTCGGCAGCAGGTGCGGCCTCGGTGCGCGGCGGCTCCAAAGTGGGGACGGCAGCAGCAGATTTGGCGGGAGTGGAGGTTGGAGACACGTTATTGGTGGGTGATCCCTAAAACATAACACAGAGCTACAGATTAAGTATATGTGTGTGTGAGATCCATGAACAAAATCAAAACGATAAACAAACAAAGTGCTGACTTACCTTTGTGGGTGACCTGATGGACACAAGAGATATTGAGATGATTTTATATAAAAAGAACAAAACTGATGAAAATGTTGATGATATTATTTAAAACATACTCACCCTTCCCTGAACAAACCATTGGAGGAGGAGGAAAAAAACATAAATTAGGATTCATATTTATTTAGTTAGAGACATAAAGTACAATAACTGCAGAGACAAGCCATAGTTGGTGAAAGTGATTTCACCAAGTATAATATGTTCATGGATCAACATTCCAGTCAACCAATCAGATTTGAGGGACATTTTTACAGTTTATGACATATTTAAACTTACAACCAGGGTTAAGTGCTTTTATATCAGTGTTATTCACCTACCTTTTTTCCTCTGATTTTAAAGGGGACCTATTATGCCCCTTTTCACAAGATGTAATATAAGTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAATATGCAGTTTTTGTGTGTCCCTTTAAATGCTAATGAGCTGCTACTCCCGGCCCGCTTGCGCTTCGGTTGCTCAAAAACAACAAAGCTGGAAAATCTCACGCAGCCGATTGTCAGTAACAGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTCAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGTGTTGAATTGACCCTCGTTTGTGAAGCAGTCTGGCGTAAAATGATGGCATGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU308735 lncRNA downstream 7255 1799964 ~ 1801427 (-) True G272053
TU308885 lncRNA downstream 104418 1703991 ~ 1704264 (-) True G272194
TU308884 lncRNA downstream 104771 1703710 ~ 1703911 (-) True G272193
TU308853 lncRNA downstream 210253 1595740 ~ 1598429 (-) True G272165
TU308835 lncRNA downstream 254538 1553913 ~ 1554144 (-) True G272149
TU308720 lncRNA upstream 82982 1895095 ~ 1915276 (-) True G272038
TU308956 lncRNA upstream 201671 2013784 ~ 2016832 (-) True G272256
TU308715 lncRNA upstream 243887 2056000 ~ 2070979 (-) True G272033
TU308975 lncRNA upstream 315447 2127560 ~ 2127840 (-) True G272271
TU308990 lncRNA upstream 351857 2163970 ~ 2164196 (-) True G272286
CI01000066_01788491_01792709.mRNA mRNA downstream 15706 1787777 ~ 1792976 (-) True CI01000066_01788491_01792709
CI01000066_01780056_01782937.mRNA mRNA downstream 25590 1779905 ~ 1783092 (-) True CI01000066_01780056_01782937
CI01000066_01770241_01778472.mRNA mRNA downstream 30210 1770088 ~ 1778472 (-) True CI01000066_01770241_01778472
CI01000066_01759103_01760191.mRNA mRNA downstream 47982 1759097 ~ 1760700 (-) True CI01000066_01759103_01760191
CI01000066_01752509_01757131.mRNA mRNA downstream 51551 1751811 ~ 1757131 (-) True CI01000066_01752509_01757131
CI01000066_01823227_01826380.mRNA mRNA upstream 10981 1823094 ~ 1826817 (-) False CI01000066_01823227_01826380
CI01000066_01843043_01848783.mRNA mRNA upstream 30441 1842554 ~ 1849466 (-) False CI01000066_01843043_01848783
CI01000066_01850128_01881359.mRNA mRNA upstream 37837 1849950 ~ 1881359 (-) True CI01000066_01850128_01881359
CI01000066_01889174_01893489.mRNA mRNA upstream 77061 1889174 ~ 1893547 (-) True CI01000066_01889174_01893489
CI01000066_01903226_01906591.mRNA mRNA upstream 91095 1903208 ~ 1907648 (-) True CI01000066_01903226_01906591
TU308664 other upstream 10916 1824590 ~ 1824703 (-) True G271984
TU308908 other upstream 29566 1841679 ~ 1841743 (-) True G272212
TU308919 other upstream 146989 1959102 ~ 1985228 (-) True G272221

Expression Profile