RNA id: TU308715



Basic Information


Item Value
RNA id TU308715
length 2500
lncRNA type read_through
GC content 0.38
exon number 2
gene id G272033
representative True

Chromosome Information


Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2056000 ~ 2070979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGCACCATTTATTTTCATATTGTCTTTATCAAAGTTATAAATATAAATATGTATTTTTAATTGAAATATTACTACTGTCCTAAATGGAGGTTCATTTCACAGCATTGTTCTTTTTGTCAGTATTTCATTTCAGATATTTCTGAAAACACTTATGAAATCAATTAAATCAATGTTAGTCTTTATCTATTCTTTTTTCATAAACAATGTATGAAGCTGATTACAATTATGATCCTTTTAAAAAATAGTAATAAAATTACATTTTGAATAGAAAATAAAGACACTTATGTATAATTATAAAAAATAATGTTTTAAAAAGAAATGTTTTGTCCCTCCAGAAGGAGCTCTTATTTTTAAAGGTGTTTCTGAAAGCGTGACACGAGAAGAAGCTGACGATATTCACAATCACAAATAATGTGCAACATAAACAACACGTTGAGGTCAAGTACGTTTCCCACTGCTGATCTGGTAAGAAAAGTTCAAACTTATTATATTTTACAGAAATGAACTTCTGAATCCTATATTTTCTGTAAAATCTCTGACCAAAGACCACAAACTTCATATCTTATTTTGGTAACACTTTTCAGTAAGTTATTAAACATGAACGAACAATGAACAATACTTTGTCAATATTATATTATATCCTTTAAATCGCTCTAAAAATCCTTCTGTGGTGTTTGACGTGTGCATAAAGATTTGAAGGTTTTGGTTCAGTCTTAAGGCCCGTTCACACCAAGAACGATAACTATAACAATATTAGCATCCACACCAACGAACGATATTGTTCTGTTTATTATATGTGCACTCTGGAGTTTTGTTGTCTACCACTTAAAACATTTGAGCTCTTTAGAGGGGACCTATTATGCAAAATTCACTTTTATAAGGTGTTTGAACACAGATGTGTGTCCACAGTGTGTGCCTATAATGGTAAAAATCCACCCAATCCTTTTTTTATAATCCGCATAAATCATAAACATTCTCTCCAAATGAGCGGTTCCAGATTTCCCCCTACTCTTTTGTAAGCCCCACCCATGACTGGTGATGATCTGTCTTATTAGCTTAGCTCCTCCCCTGAGTGAGCTGTACACAGTCCGCCATGTTTATCTCCTCGCCAAAGCAGCATTCGCGTAAGAAGTGTATTCTTATTAAAGTTACTAAAGTTATTTAATCAAGAGCAGTGAGTGATTATCTGTATTTCTTTTGTTGTTTGGATCATATTAACAGCATATACAGCAGTAAGTACTGTATATTACGCTTCTGTAACTTTAATACACAGATCTAATATACACATGCGATTTCTTTCCTTGTTGTTTATGTTCACAGACATAACCGACTGTTTGTGTGTTTTTGACTTAACCTTGTGTGTATTTGACAGTTTAAGTGCAGTAAGACGTGAAAGAGGAATTAGTTTAATACTCACGAGATGTGCCATCTGACAGCCAGCTTTCTGTGCACATGCTTCAGGTGTGTGCTCAGAAAACCATATATCAGAAGTTTAAGCATGTTTTTCCTTCTACTCAAAAAATTTACAACATTACAGTTGTGGTGTGGACTCTGCTATTGCTTTACATTTCGAATGATTTTTAAAAAATCTTTAATCTTTCGAATCTTTATGGTTATCATTATAGTTATCGTCCTTACACCGTGTCTACACCGGACGCGACAAAAAAAAACATTATTAGACAATAGAACCCATTATATTCAGTGATGTTGTCTACACTAGATACGGCACGACGCAAGCGACAAATGTCCGACAGTAAACTGATGCCTCGTTCTATTTATGACATACTGACATGAAGAACAAATGCTTTGCAACGGGCGCTTTGACGTGTCCAGTGTAGATGGCTTTTAGCTGTTGCGACGCGAGCGACAACAGTCGCGTCTGGTGTAGACATGTGTTAGTGAGAACAGACCTTTACTGTTCAACAACACCTGCACTGACCAGCGGTGCATCCGAAATCGCACACTGTCTGAGTAGGTACTATCATGTGACTTGTTGTCACTGTCATGTGACCTACAGCCTCAGTTGCGTCGCTTCACTGCCTCTGCCGTGTCATGTGATAGTAAAGTGTTCATCGAATGTGCACTTCAGAAGTAGTAGGTCATCCGGGTACTTGTTTTTTGAATACTTTGTATTCTGACATACTACTCTGTTGGTGTACTGTTTTTTGCATACTGTATAGCAGGGAAGTATTTGATTTCGGACGCAACGCAACTGTTCCTTTTCTGTCTTTAAGCAACCAAGCGACGGGACATGTTTTCATAAATTGTGTCTTCTGATGACACATCCGTGATCTTCGCCCTGCTATCTGGTGGGCTTTGGTCTTTCTTGGGGTCCGTCGTAGATGCTGGGTCTCTTGCAGAACGATGACGGACCACAGCATATTCATCGGTCAGTGAGGAGATGCCCCTGATCTCTCCTGACGGCGGCTCTGCGTTCGTGAAGTCGATGGAGGAATAATGAGGAGATTCTGGTGGTTTATGTGTAACGGCGTAAACACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU308956 lncRNA downstream 39168 2013784 ~ 2016832 (-) True G272256
TU308720 lncRNA downstream 140724 1895095 ~ 1915276 (-) True G272038
TU308748 lncRNA downstream 243887 1808682 ~ 1812113 (-) True G272066
TU308735 lncRNA downstream 254573 1799964 ~ 1801427 (-) True G272053
TU308885 lncRNA downstream 351736 1703991 ~ 1704264 (-) True G272194
TU308975 lncRNA upstream 56581 2127560 ~ 2127840 (-) True G272271
TU308990 lncRNA upstream 92991 2163970 ~ 2164196 (-) True G272286
TU308994 lncRNA upstream 99701 2170680 ~ 2170898 (-) True G272290
TU308995 lncRNA upstream 100051 2171030 ~ 2171258 (-) True G272291
TU308997 lncRNA upstream 105734 2176713 ~ 2176934 (-) True G272293
CI01000066_01926730_01937406.mRNA mRNA downstream 118041 1926707 ~ 1937959 (-) True CI01000066_01926730_01937406
CI01000066_01921007_01923459.mRNA mRNA downstream 132541 1920719 ~ 1923459 (-) True CI01000066_01921007_01923459
CI01000066_01903226_01906591.mRNA mRNA downstream 148352 1903208 ~ 1907648 (-) True CI01000066_01903226_01906591
CI01000066_01889174_01893489.mRNA mRNA downstream 162453 1889174 ~ 1893547 (-) True CI01000066_01889174_01893489
CI01000066_01850128_01881359.mRNA mRNA downstream 174641 1849950 ~ 1881359 (-) True CI01000066_01850128_01881359
CI01000066_02074798_02093516.mRNA mRNA upstream 3819 2074798 ~ 2093516 (-) True CI01000066_02074798_02093516
CI01000066_02117493_02123683.mRNA mRNA upstream 45828 2116807 ~ 2123683 (-) True CI01000066_02117493_02123683
CI01000066_02197683_02248608.mRNA mRNA upstream 126704 2197683 ~ 2251163 (-) False CI01000066_02197683_02248608
CI01000066_02256946_02264417.mRNA mRNA upstream 185615 2256594 ~ 2265481 (-) True CI01000066_02256946_02264417
CI01000066_02325374_02330855.mRNA mRNA upstream 254019 2324998 ~ 2330855 (-) True CI01000066_02325374_02330855
TU308919 other downstream 70772 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 207141 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 231297 1824590 ~ 1824703 (-) True G271984

Expression Profile