RNA id: TU308990


Basic Information

Item Value
RNA id TU308990
length 227
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G272286
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2163970 ~ 2164196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAAAGTCAGAATTGTGAGTTATAAAGTCAGAATTAATATAAAGTCAGAATTGCGTGATATAGTCAAAATTGAGAGTTACAAACTTACAATTCTGAGAAAAAAAGTCAGTCTTTTTCCCCTCACAAAATTTGACATTATAACACACAATCACAAGTTTATATCTCACAATTCTGACTTTATAACTCGCAATTGCGAGTTTAAATCTCGCAATTTTGAGGAAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308975 lncRNA downstream 36130 2127560 ~ 2127840 (-) True G272271
TU308715 lncRNA downstream 92991 2056000 ~ 2070979 (-) True G272033
TU308956 lncRNA downstream 147138 2013784 ~ 2016832 (-) True G272256
TU308720 lncRNA downstream 248694 1895095 ~ 1915276 (-) True G272038
TU308748 lncRNA downstream 351857 1808682 ~ 1812113 (-) True G272066
TU308994 lncRNA upstream 6484 2170680 ~ 2170898 (-) True G272290
TU308995 lncRNA upstream 6834 2171030 ~ 2171258 (-) True G272291
TU308997 lncRNA upstream 12517 2176713 ~ 2176934 (-) True G272293
TU308998 lncRNA upstream 12932 2177128 ~ 2177359 (-) True G272294
TU308749 lncRNA upstream 73986 2238182 ~ 2241265 (-) True G272067
CI01000066_02117493_02123683.mRNA mRNA downstream 40287 2116807 ~ 2123683 (-) True CI01000066_02117493_02123683
CI01000066_02074798_02093516.mRNA mRNA downstream 70454 2074798 ~ 2093516 (-) True CI01000066_02074798_02093516
CI01000066_02057126_02059813.mRNA mRNA downstream 104157 2057081 ~ 2059813 (-) True CI01000066_02057126_02059813
CI01000066_01926730_01937406.mRNA mRNA downstream 226011 1926707 ~ 1937959 (-) True CI01000066_01926730_01937406
CI01000066_01921007_01923459.mRNA mRNA downstream 240511 1920719 ~ 1923459 (-) True CI01000066_01921007_01923459
CI01000066_02197683_02248608.mRNA mRNA upstream 33487 2197683 ~ 2251163 (-) False CI01000066_02197683_02248608
CI01000066_02256946_02264417.mRNA mRNA upstream 92398 2256594 ~ 2265481 (-) True CI01000066_02256946_02264417
CI01000066_02325374_02330855.mRNA mRNA upstream 160802 2324998 ~ 2330855 (-) True CI01000066_02325374_02330855
CI01000066_02388814_02390434.mRNA mRNA upstream 224424 2388620 ~ 2390434 (-) True CI01000066_02388814_02390434
CI01000066_02395532_02401122.mRNA mRNA upstream 231100 2395296 ~ 2401122 (-) True CI01000066_02395532_02401122
TU308919 other downstream 178742 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 315111 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 339267 1824590 ~ 1824703 (-) True G271984

Expression Profile