RNA id: TU308749


Basic Information

Item Value
RNA id TU308749
length 3061
lncRNA type intronic
GC content 0.38
exon number 2
gene id G272067
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2238182 ~ 2241265 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGGACCTTCAACCCGTTGAACCCCATTGAAGTCCACTATATGGAGAAAAATCCTAGAATGTTTTCCTCAAAAACCTTAATTTCTTTTCGACTGAGGAAAGCAAGACGTAAACATGGGAGTGAGTATCAGGAAATTTTAATTCATTTCTGTGGAACAACAAAAAAAGATATTTTGAGGATCTTTAGTGTCCAAACAACATTGAATCTCATTGCCTTTGACAAAACACTGATGAGATTTTTCAAAATATCCTCTTTTGTATTCAACAGAAGAAAGTCATTCAGGTTTGAAATCACACAAGAGCGAGTAAATGTACAAATTGGGTGTTTCACACCAGGAAAAAATTGTTTGCAGTTGATTAAAACCATTTCTGAGGAGGCTTTTCAACCAGGACATGGAGCCTAAAGATCATGTTCACCCTCCAAAACATCTCCATGCATGCTGCTTTTTCAAATCCGTCATTGTTTACTATTATTGCTGTAAATTTTGTTGCATTTAAATTAGTAGCAGTAGCCAAATACTATCTTATTTGGCAGCTTTCTGATTAGAGAGTGTGTATACATGTATATTTGACATATTGACAGTCGTTTTTAGTCCAAAGTCCAACATTAGCATCTTCCTTGAAGTGCACCGTTTATAGGCTCAGTGTGTCATTTTAGTGTGAGACAGTAATTACAGGTCTGTCTTTCTCGCCACTGACGGGAGGACACTGCGAACCACTGTAGGTGTAAAACGCGAGAGAGAAAGATGTGTGGAGAAATTAAACCGAATACAGGGTTCCATGTTAAACAAGCTGTCGCTCGACACCGATGTTGTTGTTTCGCGTACTGCTGGACGAGGGAGGGTTTGGCTTTCATGTTCAGCTCGTTTGAATCTCACACACACATTAGTGTGCTCATTTCGGCCGGTCTTTTGTGCTGTGATAATTGCATAGGCTTTTTCCTGTATCTGCTTTCAAGTCCTCCGCTGAGCCGGTCCATGGCTTCAAACGCCCCGCTGGAGAGAGTAACACAGGCTTAATGAAGCCGTTCAGACCACCGAGGCCAATTACTCGCGCACACACATACATGCTGCTTTCACTAATCGCTGATTAAATAGCAAATCATACTTTTGTACAGATGCTGTGCGTAAATACAGACCTGTCGCATTGAGCCTTTGACTGTCAAAAAGCACCAACACACACACATACTTCGCCTACGTTTGTCTTTAGATGACACTGAGAATGAAGCCGCTCTACTGATCTTTAACTAATGGAGGAAAACTTTCAAGATGTGCTTTGACAGCATCTCAGCGCTTGAGTGTTTAATAGTGTTTCATGTTTTTAAAGTATGAGGTAGGAATGAGTGGTATTTCCAAAATATTGTCACGGTATGAGCAATTTTGTTCGCATTCAGCTGAAATTACTGTGATAATGACTTATTTGCACACTCTATACAGCATTTTTGCATTACTCTGTTTCTTTGTGTTTATATATTATGTAAACCCACTAAAATCCATGCAAACATGGTGTAGCAAGTTGACATTTCTATTCTTGCACCTTTATATAACGCTGTCACACTTCATACATTCACTAAAAATCACCAAAAACAATAAAGTCAGTTCTTCTCGTTTTCAGATAATCACATTTAAGTGCCCCTATTTTGATTTAATATTATTTTTTAAATTTATTGCAGCATCACCTCCTGTCTGAAATGGTTCGATAAAGGATTTGGTCTCTTTAAACCCCGCCTTTTGAGAGCCTGCTGTGCTCTGATTGGTCAGATGGCAATGAGAAAAATGTTAATCTAAACTTTTCAGAAAGTGGTTTTGAAAAATATGTAAATTCATTCTTAAATTTATGTATATACTTTAAAGTTACAGTGTTCAGTAGGTGCTGCATAGCAGGAATGACAAATTTAATTAAAATACAAAAAAACAACAACAAAAAAAAACAGTTTGCATTCTCTCCTGTCAGATATCGCTGTACTAACTGCATATGCTGTCACTTTTTTTGGATCAAGAGATGTTTTCCTGACGTCTACATATCCATCCGTTCTGATGAGATCGTACTGTACAATGTTTTCTCTTTCCGACATCTTTCATCTTTAAACATGCCTGCTTTGCTTGTTGTCATTGTCAACTCTTCTCACACATGCATGTAACTTTGCAAGAGTTTATTCTTTAAATAAGGAGTAAAAATAGAGCATTACATCATGCTCATCATGCTCGGCCTCATGGGAGGTCAAAGAGAGGTCATTCTCATACCTTTGCAGCAATAATAGGTACAAGAAAAACTTCAAGTCGGAATGAGCATGTGCTTTCCTCAGACTCGGTTCAGGTGTACAAATAGTTTGTTCGAAGCTAAAATGCCCCCACCACACACACACACTGTGTTGAGCTGAAGGGGATGTGAAACTCACTAGGGATGTGAAACTCTCATTCCGTTTACCAGCTCAGTATCTCCCCGTTTAGTGTGTCTCTCATTGGCCTTTTCTCTTCATTTGTTTATCAGGATTATTGTCAATCTCTTCTTTTGTCTGGTAGCTCTGATTGTCAGTTATTTGTCTTTTAGTGTGTTGCTAAGATGTTTTGGGGGGAGGGGGAGGGGGTTAGTGTGTTATCGTGTGCTACATGATATCAAAATGATCAAAATATTGCAAATATATGCATATTGCAATGGCTTGCGATAATTGAATGTTTTGAAAGGTCAATTCACACCGCACCAACAGACGGTGACCAATGCGGACAGTCACCTGATTACAGTATGTCACTTCTCAGACGTTTCATGACTCAACAAGCGGCGAAAATAAGCTCTGACGGACGGCAACAGACACCAACAGGGGAACACACTGATCCGACGAAGTGTTTGTTGTCGTCTGTCAGAACAAATTTCCGAAAAGTCAAAGTTTTAGGTTGACGGAGATCAGACAGTCAACATGGTCAAAAAAATTTGAAACATGTTGTTTTTTTCCATTTTTTTAAAATTATAATTTAAATAGATTTTACACACTTATTGTATTGCATATCACATTAGTTACTGCATATGTCATTTTTATTAAATATCATGCGGGGTTTTAGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308998 lncRNA downstream 60823 2177128 ~ 2177359 (-) True G272294
TU308997 lncRNA downstream 61248 2176713 ~ 2176934 (-) True G272293
TU308995 lncRNA downstream 66924 2171030 ~ 2171258 (-) True G272291
TU308994 lncRNA downstream 67284 2170680 ~ 2170898 (-) True G272290
TU308990 lncRNA downstream 73986 2163970 ~ 2164196 (-) True G272286
TU309005 lncRNA upstream 8104 2249369 ~ 2249586 (-) False CI01000066_02197683_02248608
TU309006 lncRNA upstream 8422 2249687 ~ 2249958 (-) True CI01000066_02197683_02248608
TU309008 lncRNA upstream 11010 2252275 ~ 2252552 (-) True G272304
TU309014 lncRNA upstream 27553 2268818 ~ 2269061 (-) True G272310
TU308742 lncRNA upstream 44053 2285318 ~ 2286986 (-) True G272060
CI01000066_02117493_02123683.mRNA mRNA downstream 114499 2116807 ~ 2123683 (-) True CI01000066_02117493_02123683
CI01000066_02074798_02093516.mRNA mRNA downstream 144666 2074798 ~ 2093516 (-) True CI01000066_02074798_02093516
CI01000066_02057126_02059813.mRNA mRNA downstream 178369 2057081 ~ 2059813 (-) True CI01000066_02057126_02059813
CI01000066_01926730_01937406.mRNA mRNA downstream 300223 1926707 ~ 1937959 (-) True CI01000066_01926730_01937406
CI01000066_01921007_01923459.mRNA mRNA downstream 314723 1920719 ~ 1923459 (-) True CI01000066_01921007_01923459
CI01000066_02256946_02264417.mRNA mRNA upstream 15329 2256594 ~ 2265481 (-) True CI01000066_02256946_02264417
CI01000066_02325374_02330855.mRNA mRNA upstream 83733 2324998 ~ 2330855 (-) True CI01000066_02325374_02330855
CI01000066_02388814_02390434.mRNA mRNA upstream 147355 2388620 ~ 2390434 (-) True CI01000066_02388814_02390434
CI01000066_02395532_02401122.mRNA mRNA upstream 154031 2395296 ~ 2401122 (-) True CI01000066_02395532_02401122
CI01000066_02438884_02448563.mRNA mRNA upstream 197569 2438834 ~ 2448839 (-) True CI01000066_02438884_02448563
TU308919 other downstream 252954 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 389323 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 413479 1824590 ~ 1824703 (-) True G271984

Expression Profile