RNA id: TU308742


Basic Information

Item Value
RNA id TU308742
length 1669
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G272060
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2285318 ~ 2286986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAAATGTTTTGAAAATGCAAGCCCTAAAAAAACAATGCATTAAAATACAAGCACGGTTAATGCAATGCATATTTTTTTGTTTCAATTAGTGCAATTCAACAAGCTTTTTGTTTCAAAAACATATGGCATTATTTTACTTCCATATCAGACACCCAAAACCACATGACCAAGACAATGACACTGATAACCTACATTAAAGACCTTCCTTAGATGTATGTATTAAGGTTTCAGGCCCCCTACAGGCCCCCTACACCCTGATATCCTTGTAATTAAAAACACTAGACAAACATACTAAACAATTTTAGACATAATTACAGAAATTTATTACAGCTGTAATTGCATGCAGGTATCTTTAAAAATATAAGTGCATATGTATGTACACAGTAAGTGCATTGTATTAAATGATTAATTTAAATGTTGGTACATAGTAGTTAAAGACACCTAATATAAAGTGGGACCCATAAACCCATAAACCATTACGTCTATCCTCATAATGATAAGTGTACCAACATGTGTGTGCATTAAGACAGCACACAGCTGTTACTGCTCTCAACTGTCACGTCTGTTTCTCTGGCAGTTTGAAGGAAATGATCCCAGTCTGGTGCTGATAGTGGCAGTTCCGTCTGAAAATGATTCCAGAACCTGCCAGTGAAAAACAAATGCTTAGTTCATTCTCAGTTCATGTTAACAAATAAAACCTTACTGTAGTGTTACCATTAAAACTGAAAAACTTTGTTTTCATTAATTAAAATAAAGCTGAAATAAAATATAAATGTCAGATGAAAAACTTAAAAAACTTGAATTGAAAAATGAAAATTAGAAATTAAATAAGTTTAAATGGAAGTAGGTATGCACCAATATGAAAATTTTGGCCAATACCGATAACTGATAATTTTTTATATTTGAAAGCAGATAAATGATAAATTGGCTGATAAATCTAAATCCAAATTTTTATATAATTTTTGAGAGTCTCGGCTGAAGGAAATAAGCCATTATTTATCGGCTTTAATATATCGGCCAAATTTTCTTTTCAGGCCGATAACAATAACATTAAAAATGAACACATCTCACTATTAAAAGCCATGTCCAAAGCACACAATTATAATGTTCTCATTATAATGTTATGTAGCCTATATGACAGACTTGTGCTGCACATGTTGCACTTAAATTTATTTTCATTTTTGAAGTGATTCTAATCATATTTCAAGCAATTCAAACCCATCAAGGCAAACAGTGCACATCTGAAGTGTCTCAGCTGAAGGAAATAAGCCATTATTTATCGGCTTTAATATATCAGCCAAATTTTCTTATCAGGCCGATAATGACAACATTAAAAATGAACATATATCGGCCGATACCGATATGGTGGCTGATATATCGTGCATCCCTAAATGGGAGTACTAAAGTTAGTTAAACTCCAACTATATTATATATATAACCTTCATACCTTAAAACCATCATACACTCTTAGAAGAAAAGGTTCTCAATGAAACCTTCAAGGGTTTCGTCAGGTGCTGTTGGTTTTAATTGATTTTGCTTTGATTCAATTTTATGAATTAAACTGCTCATAGACATATTTTCTCACTAGAAAAAATTGAAATAACCTGTTAAACACAAGTATTATTCATTCATTAAAGACATTTCTCCTTATATAGAACCTTTTTGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309014 lncRNA downstream 16257 2268818 ~ 2269061 (-) True G272310
TU309008 lncRNA downstream 32766 2252275 ~ 2252552 (-) True G272304
TU309006 lncRNA downstream 35360 2249687 ~ 2249958 (-) True CI01000066_02197683_02248608
TU309005 lncRNA downstream 35732 2249369 ~ 2249586 (-) False CI01000066_02197683_02248608
TU308749 lncRNA downstream 44053 2238182 ~ 2241265 (-) True G272067
TU308721 lncRNA upstream 30942 2317928 ~ 2318427 (-) True G272039
TU309038 lncRNA upstream 47192 2334178 ~ 2334388 (-) True G272317
TU308703 lncRNA upstream 237516 2524502 ~ 2526631 (-) True G272021
TU309088 lncRNA upstream 243812 2530798 ~ 2532380 (-) True G272367
TU308768 lncRNA upstream 475162 2762148 ~ 2773639 (-) True G272086
CI01000066_02256946_02264417.mRNA mRNA downstream 19837 2256594 ~ 2265481 (-) True CI01000066_02256946_02264417
CI01000066_02197683_02248608.mRNA mRNA downstream 34155 2197683 ~ 2251163 (-) False CI01000066_02197683_02248608
CI01000066_02117493_02123683.mRNA mRNA downstream 161635 2116807 ~ 2123683 (-) True CI01000066_02117493_02123683
CI01000066_02074798_02093516.mRNA mRNA downstream 191802 2074798 ~ 2093516 (-) True CI01000066_02074798_02093516
CI01000066_02057126_02059813.mRNA mRNA downstream 225505 2057081 ~ 2059813 (-) True CI01000066_02057126_02059813
CI01000066_02325374_02330855.mRNA mRNA upstream 38012 2324998 ~ 2330855 (-) True CI01000066_02325374_02330855
CI01000066_02388814_02390434.mRNA mRNA upstream 101634 2388620 ~ 2390434 (-) True CI01000066_02388814_02390434
CI01000066_02395532_02401122.mRNA mRNA upstream 108310 2395296 ~ 2401122 (-) True CI01000066_02395532_02401122
CI01000066_02438884_02448563.mRNA mRNA upstream 151848 2438834 ~ 2448839 (-) True CI01000066_02438884_02448563
CI01000066_02459724_02480935.mRNA mRNA upstream 172719 2459705 ~ 2481167 (-) True CI01000066_02459724_02480935
TU308919 other downstream 300090 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 436459 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 460615 1824590 ~ 1824703 (-) True G271984

Expression Profile