RNA id: TU307971


Basic Information

Item Value
RNA id TU307971
length 295
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G271370
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2958274 ~ 2958568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATAATTGACGTGACCCAGTTGCTAAATTTAGTTTCACATTCTCTGGAAGGTTCTTCCGGAAATAAACAATGTTTTCAATGTGCAGTGTTCCTGTGGGCATTCAAAAGCTCAGGGAGAAAATGGACAATGAAGCATTTGCTCCCAGCGGAGCGTCTGCCATTCACACGCGTCTCTGCGGCCCCGCAGACGACCTTTCTGAAAGGCCATCATGCCCTCGTGCCCTCCCGTTACCCTCATTCACACCAGCCACTGCACAGCTTTCTACAAGAACCTCTCCTCTCCTTGAGTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307964 lncRNA upstream 12446 2945351 ~ 2945828 (+) True G271365
TU307952 lncRNA upstream 28907 2928064 ~ 2929367 (+) True G271356
TU307916 lncRNA upstream 91102 2866154 ~ 2867172 (+) True CI01000066_02832702_02867162
TU307940 lncRNA upstream 93229 2864731 ~ 2865045 (+) True G271346
TU307929 lncRNA upstream 110107 2847075 ~ 2848167 (+) True G271336
TU307977 lncRNA downstream 7792 2966360 ~ 2966650 (+) True G271376
TU307979 lncRNA downstream 11504 2970072 ~ 2970283 (+) True G271378
TU307983 lncRNA downstream 22600 2981168 ~ 2981430 (+) True CI01000066_02977587_02982602
TU307984 lncRNA downstream 24620 2983188 ~ 2985253 (+) True G271383
TU307985 lncRNA downstream 26768 2985336 ~ 2985830 (+) True G271384
CI01000066_02832702_02867162.mRNA mRNA upstream 90886 2831625 ~ 2867388 (+) False CI01000066_02832702_02867162
CI01000066_02808136_02808643.mRNA mRNA upstream 149594 2806997 ~ 2808680 (+) True CI01000066_02808136_02808643
CI01000066_02698232_02698587.mRNA mRNA upstream 259404 2698232 ~ 2698870 (+) True CI01000066_02698232_02698587
CI01000066_02644148_02648505.mRNA mRNA upstream 309169 2644086 ~ 2649105 (+) True CI01000066_02644148_02648505
CI01000066_02636488_02638384.mRNA mRNA upstream 319808 2636379 ~ 2638466 (+) False CI01000066_02636488_02638384
CI01000066_02977587_02982602.mRNA mRNA downstream 17079 2975647 ~ 2982870 (+) False CI01000066_02977587_02982602
CI01000066_03011532_03035612.mRNA mRNA downstream 52847 3011415 ~ 3037266 (+) True CI01000066_03011532_03035612
CI01000066_03148145_03156040.mRNA mRNA downstream 189577 3148145 ~ 3156468 (+) True CI01000066_03148145_03156040
CI01000066_03174704_03185343.mRNA mRNA downstream 216136 3174704 ~ 3185343 (+) True CI01000066_03174704_03185343
CI01000066_03195286_03201328.mRNA mRNA downstream 236718 3195286 ~ 3201672 (+) True CI01000066_03195286_03201328
TU307682 other upstream 519105 2430710 ~ 2439169 (+) True G271105
TU307667 other upstream 651254 2306852 ~ 2307020 (+) True G271092
TU307673 other upstream 678714 2269169 ~ 2279560 (+) True G271097
TU307529 other upstream 973260 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307522 other upstream 1110522 1844452 ~ 1847752 (+) True G270973
TU308039 other downstream 254436 3213004 ~ 3213245 (+) True G271433
TU308049 other downstream 388225 3346793 ~ 3353514 (+) True G271443

Expression Profile