RNA id: TU307997


Basic Information

Item Value
RNA id TU307997
length 356
lncRNA type read_through
GC content 0.46
exon number 2
gene id G271395
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2999812 ~ 3044986 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTTTTCAGTTTTCAGTCGAAATTGGTTTTATTGCATATTACATTATTGCAATTACACAATTAACGTTCTCCGACGCAGAATTGGCACCCTAATATGTTGAATATCCCAGCGTGATGGGGCAGGGAACCAGAACAGCCTCATTTTGCTGTTGTGAAAACTCTTTCTTTTTTGCCAAAGTCATTTGCATTAGCTGTGGAAAGCATTAATCCCTTTAGCCTTCAAAGGCCGGATCCAGGTCCCAGACCTCCTCCATGCCGTTCCACTGATGCTGCCCGTCGCTCCGCTCCCAATGCAACGTGAAATCTTGATAAAGCAGCGGGCTCCTTCGAACGTATATCCTTCTTCCCATCCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307994 lncRNA upstream 1060 2998494 ~ 2998752 (+) True G271393
TU307993 lncRNA upstream 1974 2997584 ~ 2997838 (+) True G271392
TU307991 lncRNA upstream 5904 2993560 ~ 2993908 (+) True G271390
TU307990 lncRNA upstream 6340 2993239 ~ 2993472 (+) True G271389
TU307989 lncRNA upstream 7150 2992434 ~ 2992662 (+) True G271388
TU307998 lncRNA downstream 348 3045334 ~ 3045971 (+) True G271396
TU308064 lncRNA downstream 68769 3113755 ~ 3113998 (+) True G271458
TU308067 lncRNA downstream 75680 3120666 ~ 3120901 (+) True G271461
TU308092 lncRNA downstream 158410 3203396 ~ 3204172 (+) True G271485
TU308041 lncRNA downstream 211666 3256652 ~ 3264434 (+) True G271435
CI01000066_02977587_02982602.mRNA mRNA upstream 16942 2975647 ~ 2982870 (+) False CI01000066_02977587_02982602
CI01000066_02832702_02867162.mRNA mRNA upstream 132424 2831625 ~ 2867388 (+) False CI01000066_02832702_02867162
CI01000066_02808136_02808643.mRNA mRNA upstream 191132 2806997 ~ 2808680 (+) True CI01000066_02808136_02808643
CI01000066_02698232_02698587.mRNA mRNA upstream 300942 2698232 ~ 2698870 (+) True CI01000066_02698232_02698587
CI01000066_02644148_02648505.mRNA mRNA upstream 350707 2644086 ~ 2649105 (+) True CI01000066_02644148_02648505
CI01000066_03148145_03156040.mRNA mRNA downstream 103159 3148145 ~ 3156468 (+) True CI01000066_03148145_03156040
CI01000066_03174704_03185343.mRNA mRNA downstream 129718 3174704 ~ 3185343 (+) True CI01000066_03174704_03185343
CI01000066_03195286_03201328.mRNA mRNA downstream 150300 3195286 ~ 3201672 (+) True CI01000066_03195286_03201328
CI01000066_03211701_03215444.mRNA mRNA downstream 166715 3211701 ~ 3215444 (+) False CI01000066_03211701_03215444
CI01000066_03231699_03235207.mRNA mRNA downstream 186713 3231699 ~ 3237053 (+) True CI01000066_03231699_03235207
TU307682 other upstream 560643 2430710 ~ 2439169 (+) True G271105
TU307667 other upstream 692792 2306852 ~ 2307020 (+) True G271092
TU307673 other upstream 720252 2269169 ~ 2279560 (+) True G271097
TU307529 other upstream 1014798 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307522 other upstream 1152060 1844452 ~ 1847752 (+) True G270973
TU308039 other downstream 168018 3213004 ~ 3213245 (+) True G271433
TU308049 other downstream 301807 3346793 ~ 3353514 (+) True G271443

Expression Profile