RNA id: TU309183


Basic Information

Item Value
RNA id TU309183
length 443
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G272431
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3120464 ~ 3120906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATAGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGCGTTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCGTAAAATGACGGCATGTCAACAACACTCTACCACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTTACCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTTTAGGGTTTGTGATGTCACCAACCCAAGAAGAAGCTTGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAACAGAGATTTCTGTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309180 lncRNA downstream 6467 3113755 ~ 3113997 (-) True G272428
TU309168 lncRNA downstream 34861 3085215 ~ 3085603 (-) True G272417
TU309163 lncRNA downstream 42508 3077560 ~ 3077956 (-) True G272412
TU308765 lncRNA downstream 137583 2981752 ~ 2982881 (-) True G272083
TU308743 lncRNA downstream 139112 2979464 ~ 2981352 (-) True G272061
TU309219 lncRNA upstream 93890 3214796 ~ 3216074 (-) True G272462
TU309232 lncRNA upstream 122362 3243268 ~ 3314289 (-) True G272472
TU309312 lncRNA upstream 322625 3488052 ~ 3488061 (-) True G272549
TU309327 lncRNA upstream 346987 3467893 ~ 3567133 (-) True G272559
TU309329 lncRNA upstream 460874 3581780 ~ 3582119 (-) True G272561
CI01000066_03044933_03045997.mRNA mRNA downstream 74467 3044336 ~ 3045997 (-) True CI01000066_03044933_03045997
CI01000066_02891474_02931062.mRNA mRNA downstream 189402 2890829 ~ 2931062 (-) False CI01000066_02891474_02931062
CI01000066_02874325_02887004.mRNA mRNA downstream 233131 2874061 ~ 2887333 (-) True CI01000066_02874325_02887004
CI01000066_02709190_02806338.mRNA mRNA downstream 314126 2709190 ~ 2806338 (-) True CI01000066_02709190_02806338
CI01000066_02652332_02680009.mRNA mRNA downstream 440424 2651327 ~ 2680040 (-) True CI01000066_02652332_02680009
CI01000066_03158972_03165320.mRNA mRNA upstream 37410 3158316 ~ 3165320 (-) True CI01000066_03158972_03165320
CI01000066_03203296_03203476.mRNA mRNA upstream 82217 3203123 ~ 3203476 (-) True CI01000066_03203296_03203476
CI01000066_03439936_03446824.mRNA mRNA upstream 318773 3439679 ~ 3448858 (-) False CI01000066_03439936_03446824
CI01000066_03454386_03455995.mRNA mRNA upstream 333424 3454330 ~ 3456166 (-) True CI01000066_03454386_03455995
CI01000066_03649007_03654018.mRNA mRNA upstream 528026 3648932 ~ 3654018 (-) True CI01000066_03649007_03654018
TU308919 other downstream 1135236 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 1271605 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 1295761 1824590 ~ 1824703 (-) True G271984

Expression Profile