RNA id: TU309219


Basic Information

Item Value
RNA id TU309219
length 448
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G272462
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3214796 ~ 3216074 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACATATGTATATATAATTGCTAGTCTGTATAATATAATATACTATAATGTAATATAATATAATATAATGGAGAAATATGTACTAGAAAATAGAAAATCATACTAGAAAATTATTCTAGTATATATACACAATTGTTCCATCTATTTCCATTTTTCCATATTCTAGTATATATCCAATGTTTCCCTTGTGGGAGGCGCTTTCCGCTTTCTGGGTCCTGGTCCTTCCCCTGAGGCTTTCGGTGGCCTGGCCGGTTTATTCCGCTGCAGTCGGGGTCCGGGCTCGGGGTCCCTGATGCAGAAAACACCAGCGCCGTTCTGAGAGAAAGAGGTGGAGTATGAGAGCATCGAGACGCCCTCCAGAGGAGCCGTGAGCGTGTGGTTGGGCGGGAACGCTGAGCCGAGGGGAGAGACTTCAGACGGGCAGGGGGAAGTGCTCGTCACGCTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309183 lncRNA downstream 93890 3120464 ~ 3120906 (-) True G272431
TU309180 lncRNA downstream 100799 3113755 ~ 3113997 (-) True G272428
TU309168 lncRNA downstream 129193 3085215 ~ 3085603 (-) True G272417
TU309163 lncRNA downstream 136840 3077560 ~ 3077956 (-) True G272412
TU308765 lncRNA downstream 231915 2981752 ~ 2982881 (-) True G272083
TU309232 lncRNA upstream 27194 3243268 ~ 3314289 (-) True G272472
TU309312 lncRNA upstream 227457 3488052 ~ 3488061 (-) True G272549
TU309327 lncRNA upstream 251819 3467893 ~ 3567133 (-) True G272559
TU309329 lncRNA upstream 365706 3581780 ~ 3582119 (-) True G272561
TU309384 lncRNA upstream 371482 3587556 ~ 3587801 (-) True G272613
CI01000066_03203296_03203476.mRNA mRNA downstream 11320 3203123 ~ 3203476 (-) True CI01000066_03203296_03203476
CI01000066_03158972_03165320.mRNA mRNA downstream 49476 3158316 ~ 3165320 (-) True CI01000066_03158972_03165320
CI01000066_03044933_03045997.mRNA mRNA downstream 168799 3044336 ~ 3045997 (-) True CI01000066_03044933_03045997
CI01000066_02891474_02931062.mRNA mRNA downstream 283734 2890829 ~ 2931062 (-) False CI01000066_02891474_02931062
CI01000066_02874325_02887004.mRNA mRNA downstream 327463 2874061 ~ 2887333 (-) True CI01000066_02874325_02887004
CI01000066_03439936_03446824.mRNA mRNA upstream 223605 3439679 ~ 3448858 (-) False CI01000066_03439936_03446824
CI01000066_03454386_03455995.mRNA mRNA upstream 238256 3454330 ~ 3456166 (-) True CI01000066_03454386_03455995
CI01000066_03649007_03654018.mRNA mRNA upstream 432858 3648932 ~ 3654018 (-) True CI01000066_03649007_03654018
CI01000066_03655461_03659325.mRNA mRNA upstream 438758 3654832 ~ 3659717 (-) True CI01000066_03655461_03659325
CI01000066_03711890_03717941.mRNA mRNA upstream 495375 3711449 ~ 3717941 (-) True CI01000066_03711890_03717941
TU308919 other downstream 1229568 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 1365937 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 1390093 1824590 ~ 1824703 (-) True G271984

Expression Profile