RNA id: TU309327


Basic Information

Item Value
RNA id TU309327
length 1576
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G272559
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3467893 ~ 3567133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGATTTAACTATCCAAATCTGAAGACATGACAGGCTCAAAAAGCATCTTAAACACAGATGTTTGTATCACTAAGCAACTGGGTGGGTAATTTGAGTGGAACAGATTTTGCAGCAATCTAAAGCGCCACCTGGTGGTGTAAAACAGTAATGCATAAACATAACAAATGCAGTGTAAGAACTCAAAAAACAGAAAGACACATATTCCCCCTAAAACACACTTACAGAGCCACAGGTGTACTGCATGTCTAACACAATGTGAATCTACTTAAACAGAATAAGGGTTACCAAAGTGCGAGAATGAAGCTCGAATCACATAGAGAGTGTATTACTGTGATCAATCACCTGCTGTCCACATGAGCGTGAGATGATGAATGACTCGTATATCTCTGAACAAGCAGCAGCAATATCTCACTGCTAGATGCACAATATCACAGATATGGGCTGGCATTAATCAGTCAATCAATCAACCAGGCACAGTTTACTACAAAACGAAGATCTTTCATCATTTACTCTCTCTCATGCCATTCCAAACCGGAACGACTTTTTCCTTCTTCGGAACGCAGAAGTTTAGCAAAATGTCCAGGCTTCTATTTTCTATATTTTAAAAGACTGATGGTGAAACACAAATCATTTCTGGATGAAATAAGTTCAGAAACTGCATCATAGAGAAAGACAGCACAATAAACCTGATGTCACATGACCACTCATACTAGGTCACTAGAGGTCTGAGTAAAAGCCATTCAATTCTCTGCACAATAGGACAGAAACAGCGTATCACTTAGAGAAGTGGCGTGATGACAGCAGTTAGTGGTGAGTGCAGCTTCGAGCGAATGGAAGAGGACTGTCGGTAATGGCCTCTCGGATTGCTCTGGATGACTCAGAAAATACATCTCAGAGACTGTTCAGGATTTGACCGATGAGATTTGAGTTTCATTTTTTGCCATTCAATGGCTAATTTTAATCAAATAGGTGCAGAACTTGTATTTCGAAGCTACAACGCCATATTCGACACATCTATACTTATATTCAGCTGACTGAGGTGAATTCCTTCAAGTCTCGCGCGTCTGTTGCCAGAGCGCGCACGTCGTCAGCGTCAGTCTTGCGACAACACGAGGCCTGCTGCATGAAGCCGGTTTCAGTTTGCTAATCAGATTGCTCTCAGCAGTGGGCGGGACTTACAAGCAGTAATCCAATTGGCTGAAAATGTGATTAATATCCGAAAGCCTGTTGCCAATTTGCAATCCACCTGAGGACCAGCGTGAGCACAAGGAGAAGTCTTCTTTGAGTTTTATGATCTCTGGGTCAGAGCTGCTGGAGGTCATGAGGAGGTGGCAGGAGAAGCAGCCACAGCAGTCTCTTATTCCACTGACCTTTTTTCTGGAGTCAGTGGAGCGCACTCAGTTCGCTGCCATAATGTTCCTTTGACAAGAACTCTTGGACGTGTCTGATAATGGACCAGCTCATACCCGTTCTCTGGGATTAAAGGTTACAACAGGTCATTTCTGTTTGAGTGCATGTTTGAAAATGGAGTTATTTACAAACAGTTTGTGTGCACAATAAAAGGCTACATGTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309232 lncRNA downstream 153604 3243268 ~ 3314289 (-) True G272472
TU309219 lncRNA downstream 251819 3214796 ~ 3216074 (-) True G272462
TU309183 lncRNA downstream 346987 3120464 ~ 3120906 (-) True G272431
TU309180 lncRNA downstream 353896 3113755 ~ 3113997 (-) True G272428
TU309168 lncRNA downstream 382290 3085215 ~ 3085603 (-) True G272417
TU309329 lncRNA upstream 14647 3581780 ~ 3582119 (-) True G272561
TU309384 lncRNA upstream 20423 3587556 ~ 3587801 (-) True G272613
TU309385 lncRNA upstream 21195 3588328 ~ 3588529 (-) True G272614
TU309386 lncRNA upstream 21862 3588995 ~ 3589368 (-) True G272615
TU309389 lncRNA upstream 25016 3592149 ~ 3592438 (-) True G272618
CI01000066_03454386_03455995.mRNA mRNA downstream 11727 3454330 ~ 3456166 (-) True CI01000066_03454386_03455995
CI01000066_03439936_03446824.mRNA mRNA downstream 19035 3439679 ~ 3448858 (-) False CI01000066_03439936_03446824
CI01000066_03203296_03203476.mRNA mRNA downstream 264417 3203123 ~ 3203476 (-) True CI01000066_03203296_03203476
CI01000066_03158972_03165320.mRNA mRNA downstream 302573 3158316 ~ 3165320 (-) True CI01000066_03158972_03165320
CI01000066_03044933_03045997.mRNA mRNA downstream 421896 3044336 ~ 3045997 (-) True CI01000066_03044933_03045997
CI01000066_03649007_03654018.mRNA mRNA upstream 81799 3648932 ~ 3654018 (-) True CI01000066_03649007_03654018
CI01000066_03655461_03659325.mRNA mRNA upstream 87699 3654832 ~ 3659717 (-) True CI01000066_03655461_03659325
CI01000066_03711890_03717941.mRNA mRNA upstream 144316 3711449 ~ 3717941 (-) True CI01000066_03711890_03717941
TU308919 other downstream 1482665 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 1619034 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 1643190 1824590 ~ 1824703 (-) True G271984

Expression Profile