RNA id: TU309329


Basic Information

Item Value
RNA id TU309329
length 340
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G272561
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3581780 ~ 3582119 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCATTTTAATTGATCGGTTTGCCATTCTTCTAGCAAACGTTTCCTGTTTATTAAAGAGACATTTCGTTTTGGTTATATAAAAACGTTTAGAAAGCGTTAACTAGAACGAGCATTGTGTGGGTGTTCACAGGTGTAAGACACATACAGATCTGGGCGGGTGAGTTACCCACACATCTGCTCTACAGACTTCAAGAACGATTCACAAGAATCACCTTCATCAAGAGAAAGGTCACGGCACGCAACACACAGCCATTTACAAACATTAGAGAAATGTTACTTTCAATAAATGCAGAAACTCACCGTGCGACAGGAACACCGTGTCTACACCGGACGAGCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309327 lncRNA downstream 14647 3467893 ~ 3567133 (-) True G272559
TU309312 lncRNA downstream 93719 3488052 ~ 3488061 (-) True G272549
TU309232 lncRNA downstream 267491 3243268 ~ 3314289 (-) True G272472
TU309219 lncRNA downstream 365706 3214796 ~ 3216074 (-) True G272462
TU309183 lncRNA downstream 460874 3120464 ~ 3120906 (-) True G272431
TU309384 lncRNA upstream 5437 3587556 ~ 3587801 (-) True G272613
TU309385 lncRNA upstream 6209 3588328 ~ 3588529 (-) True G272614
TU309386 lncRNA upstream 6876 3588995 ~ 3589368 (-) True G272615
TU309389 lncRNA upstream 10030 3592149 ~ 3592438 (-) True G272618
TU309396 lncRNA upstream 16679 3598798 ~ 3599122 (-) True G272624
CI01000066_03454386_03455995.mRNA mRNA downstream 125614 3454330 ~ 3456166 (-) True CI01000066_03454386_03455995
CI01000066_03439936_03446824.mRNA mRNA downstream 132922 3439679 ~ 3448858 (-) False CI01000066_03439936_03446824
CI01000066_03203296_03203476.mRNA mRNA downstream 378304 3203123 ~ 3203476 (-) True CI01000066_03203296_03203476
CI01000066_03158972_03165320.mRNA mRNA downstream 416460 3158316 ~ 3165320 (-) True CI01000066_03158972_03165320
CI01000066_03044933_03045997.mRNA mRNA downstream 535783 3044336 ~ 3045997 (-) True CI01000066_03044933_03045997
CI01000066_03649007_03654018.mRNA mRNA upstream 66813 3648932 ~ 3654018 (-) True CI01000066_03649007_03654018
CI01000066_03655461_03659325.mRNA mRNA upstream 72713 3654832 ~ 3659717 (-) True CI01000066_03655461_03659325
CI01000066_03711890_03717941.mRNA mRNA upstream 129330 3711449 ~ 3717941 (-) True CI01000066_03711890_03717941
TU308919 other downstream 1596552 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 1732921 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 1757077 1824590 ~ 1824703 (-) True G271984

Expression Profile