RNA id: TU309386


Basic Information

Item Value
RNA id TU309386
length 374
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G272615
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3588995 ~ 3589368 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGTAGAGGAGAGATGTGCTAATGCTCTGCTTGAATTAATAATGGGCACAAAAAATCCTTTAAAATGTCTCAGAGAAGCACCAACCAAAAAAATCAAATAAAAACAAAACACATATGCTGGTGATTTTTGCATGTGCAAACACAACTTACAATTTCCTCAGAACATATAACAATGAAATTAATCTTATTATATGATAAACATCATATCATGAACATTGCTAATTTAAACAGACAGCACAAAACGAGTCCACTGAGGCTGAAACCAAACACTGTGACCTCCAGGGCCGGGAGTCTGTCGTTCGTGACCCCGCCCACGTCTCCACTGCTCATTACGGCTCCTCAATTAAAGAGAGAGCAGCAGGTGTTTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309385 lncRNA downstream 466 3588328 ~ 3588529 (-) True G272614
TU309384 lncRNA downstream 1194 3587556 ~ 3587801 (-) True G272613
TU309329 lncRNA downstream 6876 3581780 ~ 3582119 (-) True G272561
TU309327 lncRNA downstream 21862 3467893 ~ 3567133 (-) True G272559
TU309312 lncRNA downstream 100934 3488052 ~ 3488061 (-) True G272549
TU309389 lncRNA upstream 2781 3592149 ~ 3592438 (-) True G272618
TU309396 lncRNA upstream 9430 3598798 ~ 3599122 (-) True G272624
TU309398 lncRNA upstream 13611 3602979 ~ 3603234 (-) True G272626
TU309393 lncRNA upstream 26499 3615867 ~ 3617509 (-) False G272622
TU309394 lncRNA upstream 26615 3615983 ~ 3617620 (-) True G272622
CI01000066_03454386_03455995.mRNA mRNA downstream 132829 3454330 ~ 3456166 (-) True CI01000066_03454386_03455995
CI01000066_03439936_03446824.mRNA mRNA downstream 140137 3439679 ~ 3448858 (-) False CI01000066_03439936_03446824
CI01000066_03203296_03203476.mRNA mRNA downstream 385519 3203123 ~ 3203476 (-) True CI01000066_03203296_03203476
CI01000066_03158972_03165320.mRNA mRNA downstream 423675 3158316 ~ 3165320 (-) True CI01000066_03158972_03165320
CI01000066_03044933_03045997.mRNA mRNA downstream 542998 3044336 ~ 3045997 (-) True CI01000066_03044933_03045997
CI01000066_03649007_03654018.mRNA mRNA upstream 59564 3648932 ~ 3654018 (-) True CI01000066_03649007_03654018
CI01000066_03655461_03659325.mRNA mRNA upstream 65464 3654832 ~ 3659717 (-) True CI01000066_03655461_03659325
CI01000066_03711890_03717941.mRNA mRNA upstream 122081 3711449 ~ 3717941 (-) True CI01000066_03711890_03717941
TU308919 other downstream 1603767 1959102 ~ 1985228 (-) True G272221
TU308908 other downstream 1740136 1841679 ~ 1841743 (-) True G272212
TU308664 other downstream 1764292 1824590 ~ 1824703 (-) True G271984

Expression Profile