RNA id: CI01000068_00423240_00429403.mRNA


Basic Information

Item Value
RNA id CI01000068_00423240_00429403.mRNA
length 3505
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000068_00423240_00429403
representative True

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 422701 ~ 430620 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACCCCGCCTGTCAGTGTTTATCAAATATGAAAGGCTCGGATATGTTTTCTTAGAAAATTAGGAGGAACCCCGAGTGTTCGTCATTACGAGCGCGCTGTAGGCAGATTCGCGCGCTTACGCGCTCCCGTAGAACCCGAAGAGCCAGTTCACGCGCGCAGAATCAACAGAGTCAGATTTAAAACACATTCACTCACACCGGACAGACAGAGCTGGAATGACACTCGGTTTATTCGTTTAACTTGCTCTGGTCAGCTGTTTCAGGATGTTTGGGTAAGTTAAACGTTTTTTTCCCCCTCAAAAATCTTTTACTCGTTTTAAACTCTTGAGTGTTTGGGCGAATCTCATTCAGTAGGTACCCAGGTCATTATATATTTTAATATATAAATATCATTTTATCATTATGTTTATGACAGTGAACTAAATTTGAAAACTATGTATCTCACATTAGTATTTATTGTACTGAGTTTAACACTTGAGATTTGATTAGTGTAATGAGAACGACATCGAAATGTGTTTATTGATTATTTTTATTAATTTTTAATGTAACAGAATTACTTATTTGTTTATTTTAATATGTTTTTACTTAATGAGATTAATAAGTATGCTGTTACTCATTTGTTTCTCTTTATATATAAGCAATTATTACTTCAAATCAGTAGTTTAACAAAAAAAAAAAAAAAAAAATCTAAGAACGTTATGCTAACATTCCCATTAAGTTATGAAAACGTTATTTCTAAAACGTTAAACAAGTATTTACAGATCAGATATCCCATAACAAACGTTCTGTTAACGTTACTGGAAGAACGTTGGTTCATAACTTTGCCAGAATGTTCTTCTACAGTCCTTGTTAGCTGGGTTTGTTTATTTGTTTGCATCACTATTGTTAAGCATGTATAAGTAAAAATATTCAGAGTATATAATTATTTAGCAGTTAATGTTAAATATTTACTCATAACACAAGTAAAGCTGTCTAATTGCGGATCAGGAGTGCTGTAGTCAGACCTCAGGAGATCTGTGTGAGCAAACACAATATTCCTCAGTGATCTGAGACCAGCAGCTCTTTATTTTGATGACATATATTGTGTGTTTCAGGTGCACGTGTATCATGTGAAACAGGTCATTCGGGTTCGTGGAAATGTTCAGACCATTTCACACGACCCTTGACCTTTTCTGCTCGACCTTTTCGCAAGACGCTGTGCCCTCGATGCTGTAAGCATGGATGTTCACATGCACAACAGTCGGACGCATCACTACGGGCTGAACAATGGTCCGAACCGCTTCTCTGAAGATGATCTGCAGTTCCTCAGTCTTGAGGAAAGGGAGTGTATTTTGTTCTTTGAGGAGACCATCGGCTCCCTGGAGGAGGACGATGAGAGGACGAGAATGTCCGCGGGCGGCCACAGGCTTGCGGTGGAGCGTCCGGCCTCTCACACACAAACAGCACGACATCACAGCCCTGTCGATCATGACATCATTGACCTGGTCCACCCTACACCTGATCCCAACAAACATAAAGACACGCTGCCCATCATCAGGCCAGATTTCCAAGAGCTGATCGCAGCCCCGGAGACCCATTATGAGGTGAAGGCGAAACATGAACCGCCGGCAGTCTCAGACACGCCACCAGAGGAGTTTGGACACCATCCGCCCTCAAGTTCAGTTCCCACTCCCGCAATAAGTGCCAATAAGATCGCCGAGCATGAGGACATCAGTCTGGAGTTACCGCAAAGCCCCTTGGTCAAACACGGCCCTCCTATCCACGCCAAGCCCACGCGTCTTCCCGACAGCATCAGCACGTTGCTGGGCAGCCGCGAACACATTCCCCATTCAATCGCCACAGAAGCCATGAGCGTGCAGGAGCGCCGGGCGCAAATGCTCGCTAACCTCACCGGCTCAGCACACCCTCTGGATGGCGGAGAGCCGTCATGCGTTCGCAATCTTCCCATGCGAAGCATATCGTTTCGAGATCCGACGCCGGACAAATCTAGGATGGAGGCGCTTTCGAAACTCGGACTTGCTCAGAGGCGATGCCAATCCGTCATGCACACTTCTCCGAGGGACGCCGAAAGTGTTAAAACCACCACATTAAAATCTAACTTACCAGCAAATGCTAGTGCTGACTTGCGCGCTACAGACACTACGGACCACTGCCAAACCAGGCGATCACAACCCATCATGCACACTTCTCCGAAAGACGCCGGAAATGTTAAAAGCACCACTTTTAAATCTACCTTACCAGCAAAAGCGAGTGCTGACATCCGCACTATGGACACCACGGACCACTGCCAAACCAGGCGATCGCAACCCATCATGCACACTTCTCCGAGGGACGCCGAAATCGCTAAAACCACCACTTTCAAATCTACCTTACCAGCAAACGCAAGTGCTGATGTCCGTGCTACGGACACCACGGATCACTACCAAACTAAATCTAGCCCTGCACCAATTTTGACGAGTGCCGAAATCACGCATAGTGATTTTAACAGCTATGGCGGTAAAAGCATAACATTGAACCCCACACCGTCCTTTAGGGTTGAGTGTGTCCCAACTTCATTACCCAAAACAGAGGCTTCGAATGCACATCTCAACAACTTTGGAGGCAGATCAAGAGCCATGACTACACCTGAACCAATCTACGGAGCCCGATCCAAAACCTTCTTCCCGGTAAAAGAGGACAACTCAAGTTCGAACAGGACTGTAAACGAAGACTTACCCAAGAGGAAAGGGTCGCACCCTGAAGCACCTGTAAGCAGGTCCAACACTCAGCCGCCCACTCCGGCTCCAAGACCACTGCGTCACCCGAGTCCACTGAGTCCCACCGGGCCACGTTCCCTGTCAAAGCCAAAGCCATCGCCATCCTTCCGTACTCAGGGAATAACAGTCCAGTTTTCTGGGAAAGGAGCCACAGATGAGGCCAGACGTGATGCACTACGCAAACTAGGACTGCTGAGGGACACGTCTTAAACGCTCATATACTACTAAATAATAATGTTGTGGCTCTGTGGTGTAGAGTTCAGTACAAAAACATTTGATAAGCTACAATTCAACCAGTGCTGGGTAGATCACTTACAAATTGAATACGGAGTACATATTATATGACGAAAATTGTAGTTAGTAACATAACCTATTACATTACACATTTTAGGTCATATAATATAAATACTTTTGAATATTTTTCAGATTACTGTTGACCTAACTCATTAAACACTTAAATTTTGATGTATAAAAACAAAGAGAAAGGAAATTATGTTAGGGTTTCCCAAACCAGGGTTCGTGAAGGAATTTCAGGGAGTTTCTAAGTTCATGAAAAATTAATAGTTACATTTTAAAACAAAAACAATTCAACTTAAAATACTTTCTTTACTTGCATGTCATGTGACCATTAAACGACATCAGAGAACCATGAACATGCAAACATGTTAAATTGACTTAATTATTAACTACTTAAAAACTTCAAGTAAATATATTACGTCACAGAGGATCGACCGACAAAAAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309950 lncRNA downstream 66028 356471 ~ 356673 (-) True G273129
TU309942 lncRNA downstream 79680 342679 ~ 343021 (-) True G273121
TU309936 lncRNA downstream 99752 322634 ~ 322949 (-) True G273115
TU309935 lncRNA downstream 102485 319900 ~ 320216 (-) True G273114
TU309867 lncRNA downstream 113597 291930 ~ 309104 (-) True G273050
TU309962 lncRNA upstream 10747 441367 ~ 441587 (-) True G273141
TU309965 lncRNA upstream 21711 452331 ~ 452563 (-) True G273144
TU309966 lncRNA upstream 22343 452963 ~ 453297 (-) True G273145
TU309967 lncRNA upstream 23112 453732 ~ 454079 (-) True G273146
TU309968 lncRNA upstream 25449 456069 ~ 456305 (-) True G273147
CI01000068_00236826_00238310.mRNA mRNA downstream 183536 236169 ~ 239165 (-) True CI01000068_00236826_00238310
CI01000068_00174820_00180047.mRNA mRNA downstream 242654 173549 ~ 180047 (-) True CI01000068_00174820_00180047
CI01000068_00121327_00131615.mRNA mRNA downstream 291086 119075 ~ 131615 (-) True CI01000068_00121327_00131615
CI01000068_00093823_00101443.mRNA mRNA downstream 320742 92676 ~ 101959 (-) True CI01000068_00093823_00101443
CI01000068_00077325_00088188.mRNA mRNA downstream 334489 76671 ~ 88212 (-) True CI01000068_00077325_00088188
CI01000068_00442295_00444826.mRNA mRNA upstream 11030 441650 ~ 444826 (-) True CI01000068_00442295_00444826
CI01000068_00449335_00450163.mRNA mRNA upstream 18715 449335 ~ 450163 (-) True CI01000068_00449335_00450163
CI01000068_00466560_00470556.mRNA mRNA upstream 35187 465807 ~ 470556 (-) True CI01000068_00466560_00470556
CI01000068_00478512_00488030.mRNA mRNA upstream 46427 477047 ~ 488902 (-) True CI01000068_00478512_00488030
CI01000068_00496537_00503427.mRNA mRNA upstream 65659 496279 ~ 503427 (-) True CI01000068_00496537_00503427
TU309991 other upstream 166588 597208 ~ 600398 (-) False CI01000068_00582352_00600267
TU309990 other upstream 166664 597284 ~ 600398 (-) True CI01000068_00582352_00600267
TU309831 other upstream 231584 662204 ~ 664896 (-) True CI01000068_00663458_00672380

Expression Profile