RNA id: TU309935


Basic Information

Item Value
RNA id TU309935
length 317
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G273114
representative True

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 319900 ~ 320216 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGACTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCGGGGAGCAGCAGCTCATTTACATTTAAAGGGACACACACAAAAACGGTGTGTTTTTGCTCACACCCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309867 lncRNA downstream 10796 291930 ~ 309104 (-) True G273050
TU309910 lncRNA downstream 132298 187399 ~ 187602 (-) True G273089
TU309891 lncRNA downstream 204136 115503 ~ 115764 (-) True G273074
TU309887 lncRNA downstream 206835 112841 ~ 113065 (-) True G273070
TU309848 lncRNA downstream 272348 46342 ~ 47552 (-) True G273031
TU309936 lncRNA upstream 2418 322634 ~ 322949 (-) True G273115
TU309942 lncRNA upstream 22463 342679 ~ 343021 (-) True G273121
TU309950 lncRNA upstream 36255 356471 ~ 356673 (-) True G273129
TU309962 lncRNA upstream 121151 441367 ~ 441587 (-) True G273141
TU309965 lncRNA upstream 132115 452331 ~ 452563 (-) True G273144
CI01000068_00236826_00238310.mRNA mRNA downstream 80735 236169 ~ 239165 (-) True CI01000068_00236826_00238310
CI01000068_00174820_00180047.mRNA mRNA downstream 139853 173549 ~ 180047 (-) True CI01000068_00174820_00180047
CI01000068_00121327_00131615.mRNA mRNA downstream 188285 119075 ~ 131615 (-) True CI01000068_00121327_00131615
CI01000068_00093823_00101443.mRNA mRNA downstream 217941 92676 ~ 101959 (-) True CI01000068_00093823_00101443
CI01000068_00077325_00088188.mRNA mRNA downstream 231688 76671 ~ 88212 (-) True CI01000068_00077325_00088188
CI01000068_00423240_00429403.mRNA mRNA upstream 102485 422701 ~ 430620 (-) True CI01000068_00423240_00429403
CI01000068_00442295_00444826.mRNA mRNA upstream 121434 441650 ~ 444826 (-) True CI01000068_00442295_00444826
CI01000068_00449335_00450163.mRNA mRNA upstream 129119 449335 ~ 450163 (-) True CI01000068_00449335_00450163
CI01000068_00466560_00470556.mRNA mRNA upstream 145591 465807 ~ 470556 (-) True CI01000068_00466560_00470556
CI01000068_00478512_00488030.mRNA mRNA upstream 156831 477047 ~ 488902 (-) True CI01000068_00478512_00488030
TU309991 other upstream 276992 597208 ~ 600398 (-) False CI01000068_00582352_00600267
TU309990 other upstream 277068 597284 ~ 600398 (-) True CI01000068_00582352_00600267
TU309831 other upstream 341988 662204 ~ 664896 (-) True CI01000068_00663458_00672380

Expression Profile