RNA id: TU309942


Basic Information

Item Value
RNA id TU309942
length 343
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G273121
representative True

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 342679 ~ 343021 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGTGTTTTAAAAAAATTATCATCAAAATTAAGTGCATTTGTGCTTAAAACAGGAACAAATATCTGCCAATGGAGTCAGAAAAATAAACTTAATTAAGGGAAAACAAGATTATTTTTCTAAGCCCGCTGGCAATTAATTTTCATGTGGAGAAAGCATAACAATATAGTAAATAAAGTATGTGAATACAGTAAATAAAGTGCACACTGGACTTCAGTATTTCATAGATGTGTTATATGGTGCTAACGTGACTCTGAAAGACCGTATGACCGTGTTCATTTCACACTCCTGCACTGCTGCTTTCTCCTCTGTTCATGATGTCGCTCTGTGTCTTTATCTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309936 lncRNA downstream 19730 322634 ~ 322949 (-) True G273115
TU309935 lncRNA downstream 22463 319900 ~ 320216 (-) True G273114
TU309867 lncRNA downstream 33575 291930 ~ 309104 (-) True G273050
TU309910 lncRNA downstream 155077 187399 ~ 187602 (-) True G273089
TU309891 lncRNA downstream 226915 115503 ~ 115764 (-) True G273074
TU309950 lncRNA upstream 13450 356471 ~ 356673 (-) True G273129
TU309962 lncRNA upstream 98346 441367 ~ 441587 (-) True G273141
TU309965 lncRNA upstream 109310 452331 ~ 452563 (-) True G273144
TU309966 lncRNA upstream 109942 452963 ~ 453297 (-) True G273145
TU309967 lncRNA upstream 110711 453732 ~ 454079 (-) True G273146
CI01000068_00236826_00238310.mRNA mRNA downstream 103514 236169 ~ 239165 (-) True CI01000068_00236826_00238310
CI01000068_00174820_00180047.mRNA mRNA downstream 162632 173549 ~ 180047 (-) True CI01000068_00174820_00180047
CI01000068_00121327_00131615.mRNA mRNA downstream 211064 119075 ~ 131615 (-) True CI01000068_00121327_00131615
CI01000068_00093823_00101443.mRNA mRNA downstream 240720 92676 ~ 101959 (-) True CI01000068_00093823_00101443
CI01000068_00077325_00088188.mRNA mRNA downstream 254467 76671 ~ 88212 (-) True CI01000068_00077325_00088188
CI01000068_00423240_00429403.mRNA mRNA upstream 79680 422701 ~ 430620 (-) True CI01000068_00423240_00429403
CI01000068_00442295_00444826.mRNA mRNA upstream 98629 441650 ~ 444826 (-) True CI01000068_00442295_00444826
CI01000068_00449335_00450163.mRNA mRNA upstream 106314 449335 ~ 450163 (-) True CI01000068_00449335_00450163
CI01000068_00466560_00470556.mRNA mRNA upstream 122786 465807 ~ 470556 (-) True CI01000068_00466560_00470556
CI01000068_00478512_00488030.mRNA mRNA upstream 134026 477047 ~ 488902 (-) True CI01000068_00478512_00488030
TU309991 other upstream 254187 597208 ~ 600398 (-) False CI01000068_00582352_00600267
TU309990 other upstream 254263 597284 ~ 600398 (-) True CI01000068_00582352_00600267
TU309831 other upstream 319183 662204 ~ 664896 (-) True CI01000068_00663458_00672380

Expression Profile