RNA id: TU309962


Basic Information

Item Value
RNA id TU309962
length 221
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G273141
representative True

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 441367 ~ 441587 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTGTTTAGGCTCAAGTTGGGAGCTATAAAAATCTCATATAAATGTATCTCTATTCACAGGTGACTATAATCTGTTTTAATTGCTTTTGTGTTTCTTTTAAATTTACATAAGGAATCAGCAAAACTTTTTAATTCAGAGCAAAACACAATAAAATTTGGTTTTGAAGCTGTAAATTTAGACTTGTTTATATGGCCTTTTCCAAACATGCACAGGATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309950 lncRNA downstream 84694 356471 ~ 356673 (-) True G273129
TU309942 lncRNA downstream 98346 342679 ~ 343021 (-) True G273121
TU309936 lncRNA downstream 118418 322634 ~ 322949 (-) True G273115
TU309935 lncRNA downstream 121151 319900 ~ 320216 (-) True G273114
TU309867 lncRNA downstream 132263 291930 ~ 309104 (-) True G273050
TU309965 lncRNA upstream 10744 452331 ~ 452563 (-) True G273144
TU309966 lncRNA upstream 11376 452963 ~ 453297 (-) True G273145
TU309967 lncRNA upstream 12145 453732 ~ 454079 (-) True G273146
TU309968 lncRNA upstream 14482 456069 ~ 456305 (-) True G273147
TU309988 lncRNA upstream 155621 599601 ~ 599703 (-) True G273165
CI01000068_00423240_00429403.mRNA mRNA downstream 10747 422701 ~ 430620 (-) True CI01000068_00423240_00429403
CI01000068_00236826_00238310.mRNA mRNA downstream 202202 236169 ~ 239165 (-) True CI01000068_00236826_00238310
CI01000068_00174820_00180047.mRNA mRNA downstream 261320 173549 ~ 180047 (-) True CI01000068_00174820_00180047
CI01000068_00121327_00131615.mRNA mRNA downstream 309752 119075 ~ 131615 (-) True CI01000068_00121327_00131615
CI01000068_00093823_00101443.mRNA mRNA downstream 339408 92676 ~ 101959 (-) True CI01000068_00093823_00101443
CI01000068_00442295_00444826.mRNA mRNA upstream 63 441650 ~ 444826 (-) True CI01000068_00442295_00444826
CI01000068_00449335_00450163.mRNA mRNA upstream 7748 449335 ~ 450163 (-) True CI01000068_00449335_00450163
CI01000068_00466560_00470556.mRNA mRNA upstream 24220 465807 ~ 470556 (-) True CI01000068_00466560_00470556
CI01000068_00478512_00488030.mRNA mRNA upstream 35460 477047 ~ 488902 (-) True CI01000068_00478512_00488030
CI01000068_00496537_00503427.mRNA mRNA upstream 54692 496279 ~ 503427 (-) True CI01000068_00496537_00503427
TU309991 other upstream 155621 597208 ~ 600398 (-) False CI01000068_00582352_00600267
TU309990 other upstream 155697 597284 ~ 600398 (-) True CI01000068_00582352_00600267
TU309831 other upstream 220617 662204 ~ 664896 (-) True CI01000068_00663458_00672380

Expression Profile