RNA id: TU309965


Basic Information

Item Value
RNA id TU309965
length 233
lncRNA type intronic
GC content 0.39
exon number 1
gene id G273144
representative True

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 452331 ~ 452563 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTATTAAATCGTGTTGCACAGGTAACATACTGTTGAAAATTTCGCAGGGTATGTTTCAAAGAGCAATGGTTAAAATCCCCCATGATAAAATTAGGGGCATCAGGGGAAACATTCTGCAACTTAGAAACAATATGTTCAACAGTCTCCTTCACTTTAGCCTCATTTGCTTTAGGGTGAATATACACCACCGTAACAAAGATTTGAGGGAATTCTCGAGGTAAGTAAAATGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309962 lncRNA downstream 10744 441367 ~ 441587 (-) True G273141
TU309950 lncRNA downstream 95658 356471 ~ 356673 (-) True G273129
TU309942 lncRNA downstream 109310 342679 ~ 343021 (-) True G273121
TU309936 lncRNA downstream 129382 322634 ~ 322949 (-) True G273115
TU309935 lncRNA downstream 132115 319900 ~ 320216 (-) True G273114
TU309966 lncRNA upstream 400 452963 ~ 453297 (-) True G273145
TU309967 lncRNA upstream 1169 453732 ~ 454079 (-) True G273146
TU309968 lncRNA upstream 3506 456069 ~ 456305 (-) True G273147
TU309988 lncRNA upstream 144645 599601 ~ 599703 (-) True G273165
TU309987 lncRNA upstream 144704 599601 ~ 599703 (-) False G273165
CI01000068_00449335_00450163.mRNA mRNA downstream 2168 449335 ~ 450163 (-) True CI01000068_00449335_00450163
CI01000068_00442295_00444826.mRNA mRNA downstream 7505 441650 ~ 444826 (-) True CI01000068_00442295_00444826
CI01000068_00423240_00429403.mRNA mRNA downstream 21711 422701 ~ 430620 (-) True CI01000068_00423240_00429403
CI01000068_00236826_00238310.mRNA mRNA downstream 213166 236169 ~ 239165 (-) True CI01000068_00236826_00238310
CI01000068_00174820_00180047.mRNA mRNA downstream 272284 173549 ~ 180047 (-) True CI01000068_00174820_00180047
CI01000068_00466560_00470556.mRNA mRNA upstream 13244 465807 ~ 470556 (-) True CI01000068_00466560_00470556
CI01000068_00478512_00488030.mRNA mRNA upstream 24484 477047 ~ 488902 (-) True CI01000068_00478512_00488030
CI01000068_00496537_00503427.mRNA mRNA upstream 43716 496279 ~ 503427 (-) True CI01000068_00496537_00503427
CI01000068_00582352_00600267.mRNA mRNA upstream 129491 582054 ~ 601519 (-) False CI01000068_00582352_00600267
CI01000068_00603672_00617563.mRNA mRNA upstream 150141 602704 ~ 617563 (-) True CI01000068_00603672_00617563
TU309991 other upstream 144645 597208 ~ 600398 (-) False CI01000068_00582352_00600267
TU309990 other upstream 144721 597284 ~ 600398 (-) True CI01000068_00582352_00600267
TU309831 other upstream 209641 662204 ~ 664896 (-) True CI01000068_00663458_00672380

Expression Profile