RNA id: TU309967


Basic Information

Item Value
RNA id TU309967
length 348
lncRNA type intronic
GC content 0.35
exon number 1
gene id G273146
representative True

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 453732 ~ 454079 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAATCAATTACCATATCTTTTGTCTTTTTTATATTTACTTGCAAAAAGGCACTGTCACACCATGTTATAAAATCATTCACCGCTGGACCATGACAATTCTCATCCTTAGTCAGCAAACTAACAATAACAGTATCATCAGTGAATTTTAAAATGAACCTGTCTTTGTGTCTACTCACACAACCATTCGTATATAGAATATAGAGTAAGGGTGAAAGGACACATCCTTGAGGAGAACCTGTGGACGTAATAAGGGTGTCTGATAAGGTGCTGTTTACTCTCACTCTCTGCTTTCTATCACTTAAACAATCTAATAACCACCCCACTATCTTAAATTCTAATTTAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309966 lncRNA downstream 435 452963 ~ 453297 (-) True G273145
TU309965 lncRNA downstream 1169 452331 ~ 452563 (-) True G273144
TU309962 lncRNA downstream 12145 441367 ~ 441587 (-) True G273141
TU309950 lncRNA downstream 97059 356471 ~ 356673 (-) True G273129
TU309942 lncRNA downstream 110711 342679 ~ 343021 (-) True G273121
TU309968 lncRNA upstream 1990 456069 ~ 456305 (-) True G273147
TU309988 lncRNA upstream 143129 599601 ~ 599703 (-) True G273165
TU309987 lncRNA upstream 143188 599601 ~ 599703 (-) False G273165
TU309986 lncRNA upstream 143205 599601 ~ 599703 (-) False G273165
TU309860 lncRNA upstream 189926 644005 ~ 645121 (-) True CI01000068_00644494_00651464
CI01000068_00449335_00450163.mRNA mRNA downstream 3569 449335 ~ 450163 (-) True CI01000068_00449335_00450163
CI01000068_00442295_00444826.mRNA mRNA downstream 8906 441650 ~ 444826 (-) True CI01000068_00442295_00444826
CI01000068_00423240_00429403.mRNA mRNA downstream 23112 422701 ~ 430620 (-) True CI01000068_00423240_00429403
CI01000068_00236826_00238310.mRNA mRNA downstream 214567 236169 ~ 239165 (-) True CI01000068_00236826_00238310
CI01000068_00174820_00180047.mRNA mRNA downstream 273685 173549 ~ 180047 (-) True CI01000068_00174820_00180047
CI01000068_00466560_00470556.mRNA mRNA upstream 11728 465807 ~ 470556 (-) True CI01000068_00466560_00470556
CI01000068_00478512_00488030.mRNA mRNA upstream 22968 477047 ~ 488902 (-) True CI01000068_00478512_00488030
CI01000068_00496537_00503427.mRNA mRNA upstream 42200 496279 ~ 503427 (-) True CI01000068_00496537_00503427
CI01000068_00582352_00600267.mRNA mRNA upstream 127975 582054 ~ 601519 (-) False CI01000068_00582352_00600267
CI01000068_00603672_00617563.mRNA mRNA upstream 148625 602704 ~ 617563 (-) True CI01000068_00603672_00617563
TU309991 other upstream 143129 597208 ~ 600398 (-) False CI01000068_00582352_00600267
TU309990 other upstream 143205 597284 ~ 600398 (-) True CI01000068_00582352_00600267
TU309831 other upstream 208125 662204 ~ 664896 (-) True CI01000068_00663458_00672380

Expression Profile