RNA id: TU310319


Basic Information

Item Value
RNA id TU310319
length 274
RNA type TUCP
GC content 0.41
exon number 1
gene id G273476
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 13430 ~ 47214 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTTTCGGTTGCGACATATTCTGCACGGTGGCTTGTTTGAGTTTTGGAAATTACGAGGCTTTCGGTTAAAATCGCACGGCTGGGCTTTAGAGCAGGTCGACAGGAGGAACACAAAGGAGGGAACTGCAGGAAAAGCCGCACGTTTGTTTGGTTGAGTGCGCTCAAAGTGAGCTCAGTGAATGCTCAGGCTTCATGCCGTTTAGTTGAGCACGCTTCTCTTCTGGTGACAATACCGGGAACAGCGTTTGTCTTGAAGAAATCATTCATATATAGACATGGTGAAGCAGACCAAGGCCAAAACTTTCCAGGCCTATCTGGACTCCTGTCACCGTCGCTACAGCTGCGTCCACTGCCGTGCACACCTGGCCAACCATGATGACCTAATTTCAAAGTCATTTCAAGGCAGCCAAGGACGCGCCTACCTGTTCAATTCTGTGGTGAATGTAGGTTGTGGTCCAGCAGAGGAAAGGCTGCTGCTGACCGGTCTTCATGCTGTGGCTGATATTTACTGTGAGAACTGCCACACCACACTGGGCTGGAAATATGAGCAGGCATTTGAGTTAAGTCAGAAGTATAAGGAGGGGAAGTTTATTATTGAATTATCTCACATGATTAAGGATAATGGCTGGGACTGAAGACTTCAGCCTTTGCTTTAACTTGCTGTCACCGCTTGCAATGGCATGAGATATGCTTTCTTTTATATATGTATCTTGGGTGATTGTTTTGTGTGTGTGTTTTGTTTTTTTTATGTGTTTTGAGGTGTGCTTGTGTGCAAGACAGGCTTAGGAGAAACTGTGCTAAAATTCTTATCAACCACTTAAATCCAGTTTTAAAAAATTCTTGATTTTTGTTGGGATTTTGACACAAGCCCTCAAATTCTCCCGATTAAGTGCAATTCATGAGGTTTAAACAAAGTGTGATGAAAATGCCACGATCCAATGACTTTTTATTCAATTCCTTTTTACTTTAAAGAACGAGGTCTTTGTGAACGAGGTAGTGTGAGTGAAATTATTTTACTATATGTGTTTTGTGTGTGTGGCTTAGAGAGGATTATGTGCAATATGCGTGTGAGAGAGTTTGCATAAAGGATGATTCATGCCTCCAAATTCAGTAATTTCGGTTGAATCCATCTTTTAATTTACCAAGTCACTGAGGAATCCCAACAAACGAACATCTGCTCAAGTTTGTTTGTGTGTGTGTGTGTTTGTCTGTGTGTGCGAGTATGAAAGGGCAAACATCAGGCTTATTGGCTGTAGAATAGAGATGGTCCACAGTTAAGACACTTCACTTACAGCTTATAAGATGTAATTCATTTTTATGTTCATCTTGTTTGTGCATTTTGTCTATGATAAATGTTGTAAGTATAATCTGACATTTGAGGAGCATGTACAGAGACATTGATCTGATCATGCTAGAGCAGACATGCCATGTAAATGTGTTTATGATTGTGTAGCAAAGTATTTCTTTGAATGCTAAACCATTAATGTGTATGACATTAACCTGAATTCTTTACATTAAAGTATGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310318 lncRNA downstream 4317 38815 ~ 39644 (-) False G273476
TU310340 lncRNA upstream 1131 48300 ~ 48503 (-) True G273493
TU310335 lncRNA upstream 19129 66298 ~ 66999 (-) True G273488
TU310329 lncRNA upstream 52551 99720 ~ 120649 (-) True G273482
TU310330 lncRNA upstream 104367 151536 ~ 154085 (-) True G273483
TU310326 lncRNA upstream 108489 157640 ~ 157731 (-) True G273481
CI01000069_00041648_00043198.mRNA mRNA downstream 520 41648 ~ 43441 (-) False CI01000069_00041648_00043198
CI01000069_00029366_00037113.mRNA mRNA downstream 6395 29357 ~ 37566 (-) True CI01000069_00029366_00037113
CI01000069_00000091_00001650.mRNA mRNA downstream 41688 91 ~ 2273 (-) True CI01000069_00000091_00001650
CI01000069_00059923_00065619.mRNA mRNA upstream 12684 59853 ~ 66016 (-) True CI01000069_00059923_00065619
CI01000069_00070778_00073734.mRNA mRNA upstream 23327 70496 ~ 74403 (-) True CI01000069_00070778_00073734
CI01000069_00142555_00146746.mRNA mRNA upstream 95154 142323 ~ 147185 (-) True CI01000069_00142555_00146746
CI01000069_00156359_00158953.mRNA mRNA upstream 108563 155732 ~ 160090 (-) False CI01000069_00156359_00158953
CI01000069_00197131_00227540.mRNA mRNA upstream 149920 197089 ~ 227924 (-) True CI01000069_00197131_00227540
TU310314 other downstream 589 41656 ~ 43372 (-) False CI01000069_00041648_00043198
TU312233 other upstream 766066 813235 ~ 954003 (-) True G275196
TU312215 other upstream 879754 926923 ~ 945804 (-) True G275178
TU312389 other upstream 1598599 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312710 other upstream 2564006 2621752 ~ 2630247 (-) False G275624
TU312711 other upstream 2564006 2621752 ~ 2630316 (-) True G275624

Expression Profile