RNA id: CI01000069_00952894_00955774.mRNA


Basic Information

Item Value
RNA id CI01000069_00952894_00955774.mRNA
length 1008
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000069_00952894_00955774
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 952361 ~ 955790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGCAGGGGTGGAGCAGGTGAGCGACTATGAAAAGCTTGTAAACACCATAGAAACTGGTTTCAGTCTAACCATCAGCAACAGCCTCAACAGGACAGTAGATGGTGCCAAGGGCTCCGACGTCAAGGTCTACCATGTGCACACTCCGTTCACCCCACAGGGCACAACTATTAAAGATTCTCAAATCCAAATGGGATCATCCAGACCTGTTCAGTCCCAGTCAACTGAAGCCAAAAACAAATTCATCAGCTATGATTCATACGAGCTGGGTCGTACTCCAGGAATGGCCACCTGCACGCACTGCCAACAGCAGGTCTTAACCAACGTCACCTACAAAGTAGGAGTTTACGCCTGGTTAATGTGCTTACTCTTCATCCTGTGCGGGTTTGTTTTATTCTGCTGTCTGATCCCATTCTTCGTCAAGTTTTTCAAAGACGTCTATCACACATGCCCGAAATGCAATAAGATCCTGCACATTGAAAAGAAACGATGCTGCTAACCCCGCCCCTTCCCCGATTTTAACACTGCTCATGGATTTGTGTTGCACCTTACACTATATGAAGGACACTTTCAGACCAACGCAGATGTCATTTAGTACAAACTTGCCTGTATGAACTAATGCTTTGCAAAGTTTGTAACTAAAAACCTACTGATGTTCATCTGGTTTAGTCTTTTAATTACAAATGAATATGAATACTCATGGTTTTGATTGTATATCTATAAGGGACTCGGGGTTAAGGGTTCACGGAACCAAAAGTTTGATTTGCCTAAGTACAGTTACATCACGTAATGTAAATATCAGCAATTTTGCTGAACTATTTAGAATGGTGGTTCTCAACAAAGGGGCCTCAAAAGGACTTAATGATTTTACCAATACAAGCATTAAAATAAGCTAACGCAACTAAAAAAAAAAAAAAAACTTTAGCAATTTTTCACTTCTGTAAAAAGCCTCTGAATCTTTACAATAATGTCAAATATGTCATATGTGCATCTAAACTGTCATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312210 lncRNA downstream 140 916484 ~ 952244 (-) True G275173
TU310594 lncRNA downstream 176726 775331 ~ 775658 (-) True G273728
TU310593 lncRNA downstream 177918 774190 ~ 774466 (-) True G273727
TU310592 lncRNA downstream 178431 773631 ~ 773953 (-) True G273726
TU310578 lncRNA downstream 194811 757368 ~ 757573 (-) True G273712
TU312280 lncRNA upstream 9610 965384 ~ 966878 (-) True G275234
TU312281 lncRNA upstream 14844 970618 ~ 971686 (-) True G275235
TU312212 lncRNA upstream 44149 999923 ~ 1002774 (-) True G275175
TU312204 lncRNA upstream 59064 1014838 ~ 1019446 (-) False G275169
TU312206 lncRNA upstream 59393 1015167 ~ 1019446 (-) True G275169
CI01000069_00919963_00924163.mRNA mRNA downstream 26774 919921 ~ 925610 (-) True CI01000069_00919963_00924163
CI01000069_00583939_00586883.mRNA mRNA downstream 365501 583794 ~ 586883 (-) True CI01000069_00583939_00586883
CI01000069_00564614_00567490.mRNA mRNA downstream 384808 563530 ~ 567576 (-) True CI01000069_00564614_00567490
CI01000069_00516206_00538847.mRNA mRNA downstream 412790 516206 ~ 539594 (-) True CI01000069_00516206_00538847
CI01000069_00486030_00493370.mRNA mRNA downstream 459014 485818 ~ 493370 (-) True CI01000069_00486030_00493370
CI01000069_00983726_00984227.mRNA mRNA upstream 27379 983153 ~ 984314 (-) True CI01000069_00983726_00984227
CI01000069_01023405_01025613.mRNA mRNA upstream 67568 1023342 ~ 1026058 (-) True CI01000069_01023405_01025613
CI01000069_01052717_01076129.mRNA mRNA upstream 96434 1052208 ~ 1076129 (-) True CI01000069_01052717_01076129
CI01000069_01085974_01097576.mRNA mRNA upstream 129891 1085665 ~ 1097576 (-) False CI01000069_01085974_01097576
CI01000069_01141607_01144384.mRNA mRNA upstream 185696 1141470 ~ 1144821 (-) True CI01000069_01141607_01144384
TU312215 other downstream 6580 926923 ~ 945804 (-) True G275178
TU310316 other downstream 905170 46896 ~ 47214 (-) False G273476
TU310320 other downstream 905215 13430 ~ 47169 (-) False G273476
TU312389 other upstream 689994 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312710 other upstream 1655401 2621752 ~ 2630247 (-) False G275624
TU312711 other upstream 1655401 2621752 ~ 2630316 (-) True G275624
TU312760 other upstream 2033252 2989026 ~ 2991817 (-) True G275668
TU312791 other upstream 2036730 2992504 ~ 3078168 (-) True G275699

Expression Profile