RNA id: CI01000069_03032171_03032924.mRNA


Basic Information

Item Value
RNA id CI01000069_03032171_03032924.mRNA
length 709
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000069_03032171_03032924
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3031990 ~ 3032924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCAGACTGCAGAGGCCGTGTCAGCAACTATAAACACTAACAGGAACTGTACGGTGGAGATCAGCAATATTAGCAGTGCTTATTGCCTTATCAATCCAAAAGTGTACATGTCCAGTGGGTTCAGTTTCCATCCTCCCCAACCCACCATCCGCACCGCCAGGACTGAGGTTTGCTCATTCACAAAGGATGACAACACTGCCACTGGGGCTGTGGGCATCTTGACCTATGACCTCTTCCACATGCAGAATCATATGTGCACTGAGCGCATGGCTATTCTGTTCTCTGTTCCCTTTGACTACCACCTCTACAAAAATGTCATGGGCATTGGGTTGTTTGAGAGCAGCCGTGGATGTGACAAGGCCCTGTATAAGCACATGTATGAGGGAAAGGACTTCAGCCAGTTCACCCGTGTAGACGCAGGGGGATCTGGGGTCATCCACAGAGGAAAGAAAGTTGACTTAAGGGCGACCATGTCTACTGTGGGCAAGGCTATTATTAAGCTAGAGGTGTATGAGAAGATGGGCTAAATATTACACAAATTCAGCTTTAACGCAGTAATTCAAAATTGTTTCATATACTTTACATGTTCTTATTCATCATATGCAAAATAATAATGAACATGGCATTGTGCTTTTAAATTTTGATGTAACTTTTTGATGTCTGTATTAATACCTGCATTTATGCTGTCCAAAACTTTTTCTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312750 lncRNA downstream 137024 2892738 ~ 2894966 (-) True G275658
TU312773 lncRNA downstream 262678 2768956 ~ 2769312 (-) True G275681
TU312764 lncRNA downstream 391456 2640335 ~ 2640534 (-) True G275672
TU312763 lncRNA downstream 391952 2639787 ~ 2640038 (-) True G275671
TU312762 lncRNA downstream 392241 2639512 ~ 2639749 (-) True G275670
TU312939 lncRNA upstream 186885 3219809 ~ 3220041 (-) True G275843
TU312952 lncRNA upstream 228372 3261296 ~ 3261504 (-) True G275856
TU312910 lncRNA upstream 247988 3280912 ~ 3284191 (-) True G275814
TU312868 lncRNA upstream 273565 3306489 ~ 3312896 (-) True G275772
TU312972 lncRNA upstream 324297 3357221 ~ 3357421 (-) True G275876
CI01000069_03027056_03028752.mRNA mRNA downstream 3238 3026925 ~ 3028752 (-) True CI01000069_03027056_03028752
CI01000069_03014089_03015762.mRNA mRNA downstream 15484 3012696 ~ 3016506 (-) True CI01000069_03014089_03015762
CI01000069_02997434_03008924.mRNA mRNA downstream 23066 2997275 ~ 3008924 (-) False CI01000069_02997434_03008924
CI01000069_02944962_02977798.mRNA mRNA downstream 54192 2944833 ~ 2977798 (-) True CI01000069_02944962_02977798
CI01000069_02934862_02943383.mRNA mRNA downstream 88607 2934092 ~ 2943383 (-) True CI01000069_02934862_02943383
CI01000069_03242808_03248880.mRNA mRNA upstream 208895 3241819 ~ 3248880 (-) True CI01000069_03242808_03248880
CI01000069_03298533_03302831.mRNA mRNA upstream 265273 3298197 ~ 3302831 (-) True CI01000069_03298533_03302831
CI01000069_03315611_03353645.mRNA mRNA upstream 282588 3315512 ~ 3353733 (-) True CI01000069_03315611_03353645
CI01000069_03365921_03371931.mRNA mRNA upstream 332539 3365463 ~ 3371944 (-) True CI01000069_03365921_03371931
CI01000069_03382399_03395900.mRNA mRNA upstream 349208 3382132 ~ 3395900 (-) True CI01000069_03382399_03395900
TU312760 other downstream 31557 2989026 ~ 2991817 (-) True G275668
TU312711 other downstream 401674 2621752 ~ 2630316 (-) True G275624
TU312710 other downstream 401743 2621752 ~ 2630247 (-) False G275624
TU312389 other downstream 1384664 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312215 other downstream 2086186 926923 ~ 945804 (-) True G275178
TU312851 other upstream 380049 3426149 ~ 3426374 (-) True G275755
TU312899 other upstream 530369 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312875 other upstream 732749 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 771692 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1906597 4942073 ~ 4942199 (-) True G276079

Expression Profile