RNA id: CI01000069_03430311_03432182.mRNA



Basic Information


Item Value
RNA id CI01000069_03430311_03432182.mRNA
length 1394
RNA type mRNA
GC content 0.47
exon number 8
gene id CI01000069_03430311_03432182
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3430283 ~ 3432207 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTAAGGATCTGGCAGTTTCTAAATATGGGGTGGAGGCAATTTGGCTTTGGATTGGTGTTTATGCTTGCTTTTGGCCTGTGTGAAGCACAGTGGCAAGGAAGGTCAATACATAATCAGTACCCAATTGGGCAAAAGCCATTAGTGCAAGATTCTCAACGGGGTGAATCCAGGGTTCCCCAGAGATATGAACCCAATAATCCTGTATTTGCACCACAAAGGTTTCCCGCTCCATTTCCTGTCCAAACACCAGCCAGGGCTGACTTTGGAAAGCCTTCTCAAGATCTTTTGGGTGTTCAGTCAAAAGAGCTGTTACAGGGTCCATTGGTGAAACTGATGTGGAGTTTTCCAAGTCTACCAGAGGAACCACAGCAGCCAGACATTCCCTTTAAGCTCCCGCATCCTATCCCTCCCAACAGTGTAGCAGCTCAGTGTGGAGAGAATTCAGTGTATGTGGAAGTGATGGAGGACTTCTTTGGGACGGGGCACCCACTGTTGTCCTCTGCTTTTACATTGGGAGGCTGTGCTGCAACTGGAGAGGATCCTTCTGCTCAAGTGCTCATCTTTGAGTCTGAACTGCATGGATGTAGCAGCACATCAACAGTGAGTGAGGATGAGCTTGTCTATACATTCTCCCTTATCTACACCCCACAAGAGGCTTCATATGGTGTTCCTATTGTCAGGAGCAGTGGTGCGGTAGTTGGTATTGAGTGTCACTATCCAAGAGTGCATAATGTGAGCAGCAATGCCTTAATACCCACTTGGGTCCCATATGCCTCTACTATAGTTGCAGAGGAACTTTTGGTCTTCTCCCTCAAGCTCATGACTGATGACTGGAGATTTGAGAGACCTTCTAAGCAGTACTTCCTGGGTGATTTCATTAACATCGAGGCTTCAGTGAGGTCGTACAACCACATTCCTCTTCGTGTGTTTGTGGATAGCTGTGTGGCTACTTCAATCCCTGATACCAGTGCTGTACCCAGATACTCCTTTATTGAGAATAATGGGTGCCTTGTTGATGCCAAGCTCACAGGCTCCACCTCTCGCTTTATGCCCCGGACTCAAATTGACAAGCTGCAGTTTCAGTTGGAGGCATTCAGATTCCAGCAAGAGATTAGTGGATTTGTCTACATCACTTGTGTTCTCAAGGTGTCTGCAGCATCAAACCCTACTAATGTTGAGCAGAAAGCTTGCTCTTGGTCTGCTAATAGGTGGGTGTCTGCTGATGAGGACGATCAGGTGTGTGGCTGCTGTGATGCAACCTGTGGCATTAGAAGTGGAAGTGATCAGCTTCTTAAAGATCTACGGTGGGACATGGCATCTGTTGGACCCATCAGAGTCAAGGACTATGGTTTCGGTCCAGTGTAGTGTAATAACTGCAGAACGGCAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312974 lncRNA downstream 69582 3360488 ~ 3360701 (-) True G275878
TU312972 lncRNA downstream 72862 3357221 ~ 3357421 (-) True G275876
TU312868 lncRNA downstream 117387 3306489 ~ 3312896 (-) True G275772
TU312910 lncRNA downstream 146092 3280912 ~ 3284191 (-) True G275814
TU312952 lncRNA downstream 168779 3261296 ~ 3261504 (-) True G275856
TU312846 lncRNA upstream 163514 3595721 ~ 3627754 (-) True G275750
TU312922 lncRNA upstream 175245 3607452 ~ 3614839 (-) True G275826
TU312850 lncRNA upstream 180546 3612753 ~ 3636263 (-) True G275754
TU312924 lncRNA upstream 182111 3614318 ~ 3633114 (-) True G275828
TU313017 lncRNA upstream 304447 3736654 ~ 3736958 (-) True G275920
CI01000069_03415853_03417644.mRNA mRNA downstream 12639 3414125 ~ 3417644 (-) False CI01000069_03415853_03417644
CI01000069_03382399_03395900.mRNA mRNA downstream 34383 3382132 ~ 3395900 (-) True CI01000069_03382399_03395900
CI01000069_03365921_03371931.mRNA mRNA downstream 58339 3365463 ~ 3371944 (-) True CI01000069_03365921_03371931
CI01000069_03315611_03353645.mRNA mRNA downstream 76550 3315512 ~ 3353733 (-) True CI01000069_03315611_03353645
CI01000069_03298533_03302831.mRNA mRNA downstream 127452 3298197 ~ 3302831 (-) True CI01000069_03298533_03302831
CI01000069_03433325_03435163.mRNA mRNA upstream 1080 3433287 ~ 3435275 (-) True CI01000069_03433325_03435163
CI01000069_03441535_03443377.mRNA mRNA upstream 9063 3441270 ~ 3443400 (-) True CI01000069_03441535_03443377
CI01000069_03444473_03455791.mRNA mRNA upstream 12185 3444392 ~ 3457756 (-) True CI01000069_03444473_03455791
CI01000069_03474790_03478425.mRNA mRNA upstream 42583 3474790 ~ 3478425 (-) True CI01000069_03474790_03478425
CI01000069_03506556_03507031.mRNA mRNA upstream 74048 3506255 ~ 3507557 (-) True CI01000069_03506556_03507031
TU312851 other downstream 3909 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 352115 2992504 ~ 3078168 (-) True G275699
TU312760 other downstream 429850 2989026 ~ 2991817 (-) True G275668
TU312711 other downstream 799967 2621752 ~ 2630316 (-) True G275624
TU312710 other downstream 800036 2621752 ~ 2630247 (-) False G275624
TU312899 other upstream 131086 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312875 other upstream 333466 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 372409 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1507314 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 1537088 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile