RNA id: CI01000069_03565665_03568486.mRNA


Basic Information

Item Value
RNA id CI01000069_03565665_03568486.mRNA
length 614
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000069_03565665_03568486
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3565540 ~ 3568486 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCTACTCTTAAATGTCTAACTGAACACTCCAGTTACACAGAGCACACGTGTGGCGTCGCATACATCCAGCAGATGGCCCTCGCTCACTGTCCTGAGACCTTCAATGTATATGAAGCATCAGTGAACGTCTTTAACCAAGAAAGAAGAGAGGAGGGAAAGAGGAGTGTAACAGGTTTTCTGTTGTTTCACATGGAGGGAAAGACAAGAAGCTTTGTGAGCTGCCATTGCAGAGATATCTTCACCAGAGATGTGCTACAGAATGGAGGGTATGGGGGATCGGCAGCGCCGCAGAGGGCCAGGGGACTCGTAGGGTTCGTAAGGTGGGTTGTTGATGGGGGTAATGGGGGTCAGGCGCAGGGGGGCCCCTGTCATCCCCGAAATATTATTCAGGCTGCGGGACTTCTCGTAGCCAGCAGCTACAAAACCCCGAAAATCCAGAGGGCATGGATGGTTAATGGATATATTACATACATCAGAGAAAGATGAATGAAAGGAATTATTATGGAAGCAAAAAAATAGTTGGATTCATTCATGGTGAATGACAAAATAGTTATTTTTTTTAAAGTTTGAAAAATCAGGGGAAAGGAAGAGAAGGAGAAAAACAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312974 lncRNA downstream 204839 3360488 ~ 3360701 (-) True G275878
TU312972 lncRNA downstream 208119 3357221 ~ 3357421 (-) True G275876
TU312868 lncRNA downstream 252644 3306489 ~ 3312896 (-) True G275772
TU312910 lncRNA downstream 281349 3280912 ~ 3284191 (-) True G275814
TU312952 lncRNA downstream 304036 3261296 ~ 3261504 (-) True G275856
TU312846 lncRNA upstream 27235 3595721 ~ 3627754 (-) True G275750
TU312922 lncRNA upstream 38966 3607452 ~ 3614839 (-) True G275826
TU312850 lncRNA upstream 44267 3612753 ~ 3636263 (-) True G275754
TU312924 lncRNA upstream 45832 3614318 ~ 3633114 (-) True G275828
TU313017 lncRNA upstream 168168 3736654 ~ 3736958 (-) True G275920
CI01000069_03506556_03507031.mRNA mRNA downstream 57983 3506255 ~ 3507557 (-) True CI01000069_03506556_03507031
CI01000069_03474790_03478425.mRNA mRNA downstream 87115 3474790 ~ 3478425 (-) True CI01000069_03474790_03478425
CI01000069_03444473_03455791.mRNA mRNA downstream 107784 3444392 ~ 3457756 (-) True CI01000069_03444473_03455791
CI01000069_03441535_03443377.mRNA mRNA downstream 122140 3441270 ~ 3443400 (-) True CI01000069_03441535_03443377
CI01000069_03433325_03435163.mRNA mRNA downstream 130265 3433287 ~ 3435275 (-) True CI01000069_03433325_03435163
CI01000069_03571631_03573352.mRNA mRNA upstream 3049 3571535 ~ 3575743 (-) False CI01000069_03571631_03573352
CI01000069_03578433_03584741.mRNA mRNA upstream 9947 3578433 ~ 3585231 (-) True CI01000069_03578433_03584741
CI01000069_03667639_03669979.mRNA mRNA upstream 99134 3667620 ~ 3669979 (-) True CI01000069_03667639_03669979
CI01000069_03670799_03677837.mRNA mRNA upstream 101785 3670271 ~ 3677843 (-) True CI01000069_03670799_03677837
CI01000069_03678617_03697993.mRNA mRNA upstream 109812 3678298 ~ 3698756 (-) True CI01000069_03678617_03697993
TU312851 other downstream 139166 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 487372 2992504 ~ 3078168 (-) True G275699
TU312760 other downstream 565107 2989026 ~ 2991817 (-) True G275668
TU312711 other downstream 935224 2621752 ~ 2630316 (-) True G275624
TU312710 other downstream 935293 2621752 ~ 2630247 (-) False G275624
TU312875 other upstream 197187 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 236130 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1371035 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 1400809 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile