RNA id: TU311499


Basic Information

Item Value
RNA id TU311499
length 259
RNA type TUCP
GC content 0.42
exon number 2
gene id CI01000069_03636156_03639756
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3635980 ~ 3639985 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACACTGACGCATCATGTTGTGATCGTACAGTATATAAGACAGATGCGCACCTTCATTTCACTCACAGCTTCAGGAAGATCAGAATAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTTTATTTAAATCTATTTAAATTTCTTATTTATTTTGCACCAACGTTGTGATAAAAAAACCCCGCTGAAATGGAGACTTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAATCTGGAGCTTTATGCTTCCTACACTTACACTTCAATGGCTTTCTACTTCAAACGGGATGATGTGGCTCTTCCTGGTTTTGCCAAGTTCTTCAAGGAGAACAGTGAGGAGGAGCGCGAGCATGCCGAGAAATTCAT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K00522 FTH1; ferritin heavy chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311516 lncRNA upstream 156507 3452564 ~ 3456210 (+) True G274564
TU311549 lncRNA upstream 190213 3420898 ~ 3422504 (+) True G274592
TU311546 lncRNA upstream 199947 3412500 ~ 3412770 (+) True G274589
TU311545 lncRNA upstream 200245 3412228 ~ 3412472 (+) True G274588
TU311501 lncRNA upstream 235910 3375008 ~ 3376807 (+) True CI01000069_03375220_03376645
TU311561 lncRNA downstream 19800 3658230 ~ 3658435 (+) True G274601
TU311614 lncRNA downstream 90452 3728882 ~ 3731583 (+) True G274651
TU311678 lncRNA downstream 98835 3737265 ~ 3737533 (+) True G274715
TU311679 lncRNA downstream 122471 3760901 ~ 3761638 (+) True G274716
TU311685 lncRNA downstream 134664 3773094 ~ 3773544 (+) True G274721
CI01000069_03595904_03596883.mRNA mRNA upstream 15617 3595726 ~ 3597100 (+) True CI01000069_03595904_03596883
CI01000069_03585382_03594261.mRNA mRNA upstream 18281 3585296 ~ 3594436 (+) True CI01000069_03585382_03594261
CI01000069_03509187_03563871.mRNA mRNA upstream 48357 3508902 ~ 3564360 (+) True CI01000069_03509187_03563871
CI01000069_03496673_03500800.mRNA mRNA upstream 111822 3496673 ~ 3500895 (+) True CI01000069_03496673_03500800
CI01000069_03488885_03492635.mRNA mRNA upstream 119971 3488885 ~ 3492746 (+) True CI01000069_03488885_03492635
CI01000069_03643296_03647762.mRNA mRNA downstream 4725 3643155 ~ 3647786 (+) True CI01000069_03643296_03647762
CI01000069_03766564_03767936.mRNA mRNA downstream 128134 3766564 ~ 3768198 (+) True CI01000069_03766564_03767936
CI01000069_03812664_03832205.mRNA mRNA downstream 174234 3812664 ~ 3832279 (+) True CI01000069_03812664_03832205
CI01000069_03835903_03837843.mRNA mRNA downstream 197473 3835903 ~ 3838319 (+) True CI01000069_03835903_03837843
CI01000069_03839830_03843013.mRNA mRNA downstream 201400 3839830 ~ 3843569 (+) True CI01000069_03839830_03843013
TU311230 other upstream 717829 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 931559 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 1440524 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 3133636 477727 ~ 479081 (+) True G273359
TU311564 other downstream 161593 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 490698 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 916879 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 1286037 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 1407797 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile