RNA id: CI01000069_04562461_04568806.mRNA



Basic Information


Item Value
RNA id CI01000069_04562461_04568806.mRNA
length 1062
RNA type mRNA
GC content 0.52
exon number 7
gene id CI01000069_04562461_04568806
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4562461 ~ 4568896 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGAAGTAAGCTAGTCACTCAGCTCAGAACCTACGTAACATGTGGGAGAAAAAGGATTGCTATAGCAACCACCTCCGTCATACAGTGTATGCGAAAATGGTTGCATGGGATTTTTGAGAAATCCCATTATTTGTTTGGAAAGCCTTATAATGTTAGTAGAACGTTGCAGTTTTCAAACATCATGCCTGTGGCAGCCACCGGCACAGAGCATGCAGTGCCGCAGGTGTTGGACACACTGAGTGACAGCGCCAGCTCCACCACTGCCAATGACCTGGACCTCATCTTCCTCAAGGGCATCATGGAGAGCCCAGTGAGTGCAGAGAGTCTGGAGGAGACACGGCTGGAGGCCGTGAGGGACAATAATGTGGAGCTGGTGCAGGACATCCTGAGAGAGCTGAGCCCCTTTACACACCGCAGCAACACCGCTGCAGAGCTGTCACGCATTCTCAACCAGCCGCACTTCCAGTCTCTGTTGGAGACCCACGACTCTGTGGCCTCTCAGACGTGTGAGACTCCGCCCCCGAGCCCCTGCGCTTTCATGGAGCCGCCCATCAACAGCGTACCAGTGCCAGCTGATGCCATCCGCATGGTGGGCATTCGCAAAGTGGCTGGAGAGCACTTGGGTGTGACGTTCCGTATTGAGAACGGAGAGCTGGTGATTGCACGTATCCTCCACGGGGGGATGATCGACCAGCAGGGTCTGCTCCACGTGGGTGACATCATCAAAGAGGTGAATGGGAGAGAGGTGGGTGATGACCCTTGTGTGCTGCAGGAGATGCTGCAGGAGGCCAGCGGCAGTGTGGTGCTCAAAATCCTTCCCAGCTACCAGGAGCCACATCCCCCAAAACAGGCCAGAGTTTGTCCCACAATTATAGGCCTATCACTTCAGCGGCTGTATGCCAAATTGCCCAGACTAGAGCAGCACAATGATGTTCGTCGGACCAAGAACATCTACCATAAAGGTACTACATGAACATTTAATGAATATCTCGTTTCTGTCTACTCACCAAGTGCCTCAAATATGACCTTTGCTGAAAATAGTGAATTTTTCATTAATACAGCA

Function


GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311644 lncRNA upstream 64912 4492640 ~ 4497549 (+) True G274681
TU311654 lncRNA upstream 72092 4487410 ~ 4490369 (+) True G274691
TU311842 lncRNA upstream 76109 4485687 ~ 4486352 (+) True G274860
TU311840 lncRNA upstream 76947 4484790 ~ 4485514 (+) True G274859
TU311839 lncRNA upstream 78015 4483880 ~ 4484446 (+) True G274858
TU311612 lncRNA downstream 21972 4590868 ~ 4625092 (+) True G274649
TU311589 lncRNA downstream 30228 4599124 ~ 4602018 (+) True G274626
TU311877 lncRNA downstream 101693 4670589 ~ 4671103 (+) True G274893
TU311881 lncRNA downstream 116280 4685176 ~ 4696072 (+) True G274897
TU311922 lncRNA downstream 198026 4766922 ~ 4767140 (+) True G274937
CI01000069_04556116_04558002.mRNA mRNA upstream 4104 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04527086_04527715.mRNA mRNA upstream 34647 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04425809_04438936.mRNA mRNA upstream 123469 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04412903_04419976.mRNA mRNA upstream 141273 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 327380 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04612170_04623197.mRNA mRNA downstream 43274 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 205080 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
CI01000069_04776672_04785162.mRNA mRNA downstream 206474 4775370 ~ 4785432 (+) True CI01000069_04776672_04785162
CI01000069_04791495_04792375.mRNA mRNA downstream 222455 4791351 ~ 4792680 (+) True CI01000069_04791495_04792375
CI01000069_04917103_04918567.mRNA mRNA downstream 348207 4917103 ~ 4918901 (+) True CI01000069_04917103_04918567
TU311605 other upstream 3981 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 429083 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 758960 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 924031 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1667573 2892846 ~ 2892971 (+) True G274314
TU311947 other downstream 355571 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 477331 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016693 True 1488 mRNA 0.59 10 CM030122.1 27655748 ~ 27669412 (-)