RNA id: TU313201


Basic Information

Item Value
RNA id TU313201
length 127
RNA type TUCP
GC content 0.35
exon number 1
gene id G276079
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4942073 ~ 4942199 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATTACAAACACGGCTGTAACCTTTGTTTTCCTGTTCCTCATCACCTTGTTCTACAGCATAGGTGCTACTTTTGTTAAGGTGAAATGAAAGATCCCTTTAAGGACATGATGCAAGGCCTCTCAAAGAAACAGCTTTAAGACATTTATTCTTTTTTGTAAATATGTGATTGTGCTGTTTGTTTGTTTGTTTTTAGATTTTACTTTAATAAAGGAAAGAAACTATTCAATTTCTCTTGTATTTTTTAATCTCAAGTTCACAAATCTGTATTGACATCTCAAGGAAAAACACTAATTTGCATGATAAACTATAGTTTTGCTCTAAATATGTTTATAGCATAAGGAGTAACATTTATTAATACACAGGAGTATTTAAAGGGCACTAGGTTTTGAAATATTTCCCTCATATCTGAATATAATAAATTGCACACAAATTTCTTAAATCCAATACTTAATTTCCTCCAAATCTGCAAGACTTTGTTCATTGGGTGACTGAAGCACAACATCTTCTAACTGTGAACATTTGTAAGCATAAATTTTTCATGCAGCAAAGTATATTAAAACATAAATTGCATAAGAAGGAGAAGCATTTTATGTAAATGGAAAGGTGTCTTTCCTGTGCAGATGTGCTCAACCCTGTCTCAGAGATGCAGATGGTTTTCAGTTCTGCTTTCGGTTGCTATTTCAGCTTGACTGTTACTTAACGCTTCCATCTGCTATTTGCTATGTTCTCTGAAGCATGTTTGTGATTTCCTTTTCTGTCCTTTTTTTTCTATTCCAGTATCTGCAACTTTAAAAACTCTCATGATGTAAATAACCACCCCACTGAAGCATTAACAGCATTTTTTTTTTTTTTTTTTTTTTTGGTGGAGCACCATATCATAATATCATTATTTTATATGTCTATTTGAATTTATTGAAAAAAAAAAAAATTCATATAATTGATTGATTTAGATTTTTATAAACTTTGTGCCTCTTATATGTTCTGTTTAAAACACAATGTCCAAGTTAATTGATTCTTTCTTTGTTTTAATAGTAAAACGTGTCTCTGTGCCCACTATGGCTCTGCTGAGTAAAGAGGAAGGTGATGGCATTGTGTTGGAGTGCCAGTTGAAGGATTATTACCCAGAAAGAGTTACTGTAAACTGGTTAAGCGATAATCAGCCTCTCACTGCTAATTATAATAAAGTGTTGCAGAACATTGGTAAAGTGGAGACAAAATATACTTACATAAGTCAAATATCTATCGGCACTCTGTATGAAGGCAAACGGTACACTTGTAAAGCCACCCACGAGTCTAAGACCTTCACCCAAGAATATAACTCGTGCACGTCAAAGTCTGTGTTAAAACCTTCAATCAAAGTAAAGAGAACCCGTCTCGAAGAAATTTTCAAGGGCGGCAAACACCAATTCTCTTGTACTGTTAAAGCGCCACACACCACTACAGTGTCGTGGTTGGCAAATGATGTCAGCAAAGTTGGCACCATTTCCAATGAACAGCCCAATATCATTGTAAACAACCTGACTTTGTCCAAAAATGAATGGTCGAGACTGAATACTATTGCTTGTATTGCTAAACATCCATGTTTCCCAGAAGAGAAAGTTGAAATTCCAGCTGATGATATGAAAAAGGTTCCTGTAGTAGTGATCAGGAGGCCTTTCAAGAAATCAGCTCAGTCTGACGGTGCTTTGCTGGAGTGTGTTGTAAAAGATCTCTCCTCTAGTGAGGTCTGCATCAAATTCCAGGCCAACAATGCTGATATCTCAGACTTCATTTGTACGGATTGTGCCCCTTCTGAAAACATTTGGTCCCTGACCACACCTTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313192 lncRNA downstream 146718 4791382 ~ 4792803 (-) False G276071
TU313193 lncRNA downstream 146818 4791382 ~ 4792703 (-) True G276071
TU313236 lncRNA downstream 228559 4704052 ~ 4710962 (-) True G276114
TU313216 lncRNA downstream 236052 4699271 ~ 4703469 (-) True G276094
TU313255 lncRNA downstream 269710 4669332 ~ 4669811 (-) True G276133
TU313229 lncRNA upstream 62180 5004379 ~ 5009473 (-) True G276107
TU313318 lncRNA upstream 117134 5059333 ~ 5059568 (-) True G276193
TU313225 lncRNA upstream 143918 5086117 ~ 5089577 (-) True G276103
TU313200 lncRNA upstream 151919 5094118 ~ 5096986 (-) True G276078
TU313217 lncRNA upstream 196159 5138358 ~ 5152509 (-) True G276095
CI01000069_04919538_04930550.mRNA mRNA downstream 8971 4919019 ~ 4930550 (-) True CI01000069_04919538_04930550
CI01000069_04802439_04905601.mRNA mRNA downstream 33635 4801597 ~ 4905886 (-) True CI01000069_04802439_04905601
CI01000069_04692723_04695795.mRNA mRNA downstream 242954 4692492 ~ 4696567 (-) True CI01000069_04692723_04695795
CI01000069_04628032_04638137.mRNA mRNA downstream 301384 4627853 ~ 4638137 (-) True CI01000069_04628032_04638137
CI01000069_04603992_04607459.mRNA mRNA downstream 331935 4603099 ~ 4607586 (-) True CI01000069_04603992_04607459
CI01000069_04942590_04973602.mRNA mRNA upstream 212 4942411 ~ 4973663 (-) False CI01000069_04942590_04973602
CI01000069_04983344_04983640.mRNA mRNA upstream 41123 4983322 ~ 4983640 (-) True CI01000069_04983344_04983640
CI01000069_04985959_04986408.mRNA mRNA upstream 43494 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_04996783_05001227.mRNA mRNA upstream 54141 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_05025745_05032197.mRNA mRNA upstream 83098 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
TU312842 other downstream 1132444 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1170301 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1363186 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 1513147 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 1861353 2992504 ~ 3078168 (-) True G275699
TU313215 other upstream 27096 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051680 False 1223 mRNA 0.41 5 NC_007114.7 33963247 ~ 33967767 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_278 True 73 tRNA 0.52 1 NC_053118.1 17855 ~ 17927 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_278 True 4123 C_gene_segment 0.48 9 NC_056701.1 12981087 ~ 12987204 (-)