RNA id: CI01000069_04942590_04973602.mRNA


Basic Information

Item Value
RNA id CI01000069_04942590_04973602.mRNA
length 2847
RNA type mRNA
GC content 0.43
exon number 11
gene id CI01000069_04942590_04973602
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4942411 ~ 4973663 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATCTCTAGAAGGAGGGAAGAACCGCTCCTTTTCATTCAATCTGTCATAAAAACGTCACCATGTTCTCTGCAGTTTTAATCTGGCTTCTGGCAAATGTAAACTGTATTCATTCATATGAACTCACTCAGCCTGAGTCTCTGACTGTCCGTTCTGATGCCACTCTAACTATCAACTGTAAAGTCTCCTATTCAGTTACTGGCTCTAGTACAGCCTGGATTCGTCAGCCTGCAGGAAAAGCTCTGGAATGGATTGGAGTGATCTGGAGTAGTGGAGGCTTAGCCTATAAGGATTCACTGAAAAGCAAGTTCAGCATCAGCAGAGACACCTCCAGTCGTTCAGCAGACTCTGATCGCTGTATTTTTATACTGCTCTGTAACATTAAAAGAATATTGTGTAACTGGGCTTTCGACTACTGGGGAAGAGGCACCAAAGTCACCGTAACAAACACCTCACCGCCAGATCAGCCTGCAACTGTCTACTTAACAGTACCTACACAAAAGGATTTAGAAACTGGAACAGCAACCTTCTTGTGTTTAGCCCAGCAGTTTTCACCTAAAACATATTCGTTTAAGTGGTTTAAGGATGAAACGCAGTTGACAAAGTTGACACATTCGATAAACACCTATGACGCAAGTGAGAAGAATGGCTCAGTAACCTTATATAGCGCCACAAGCATTTTGCAAATCAGTGCCGGAGAATGGAAGACAGCCGCCAAAATCAAGTGCGAGTTCGAGCACAAGACGGGAAAAGAAGTCAGAGAGGCCGAATATACAGATAATTTATCCTTAGTAGATAAATTAACACTGACACTGAAGCCACCAATTGAAAAAGAACTATTTCTCAATAATAAAGTTGTCTTGCAAGCTGTTGTTTCTGGAGATGCAAAAAAAGTGACAGAAGCTTCAGTGTCATGCACAGTGAATAATGACCGGGTGGATCCTAGAAGTTTCAACGTTTCTCAGGACAATTCACAGAATATTAAAATCCACAAATTCATAGTTGATACAAATAAATGGTTTGATGGTGAAACTGTCACCTGCACCATCAACGACGGACACATCAAGCAGGAAATCCATTGTAATAAAGGAGATGAAAAGACACCCAATGTTACCATTTACAGACCTGATAGTAACAACGACACAAATCATGTCTCTCTGGTGTGTGAGGTCACAAGCCCTAAACTTGGCGATGTCTATATCATGTGGAAAGTGAGAGAAAAGCCTTACGAAGAGGCCATAACCAGTCTTCCTATTCATCAAAAGAGCTCCACATCGGTTGTCAGCATCCTAACAGTGTCAAAACAAGAGTATGAGGACCCCGGAACCACCATCACCTGCGCAGTTAAACATGCCAAGAAGGGGAATTTAAGCGCTCCATTACAAGTTTCAACAAGCCAAAGGGATCCACCTGAGCCAGAGAAGGGTTTTGCTCTGAACTGTAATAATGATGTTCTGGAGGAGGATGAGTTCAGAAGTCTCTGGTCCACTGCCACTTCATTCATCTTCCTCTTCCTCTTTTCTCTGACCTACAGCGCTGTACTCAGCCTCTTCAATCTCGTGCGCCACCAAGTGGTAAAATTGACAATAACCGGGAAGAGTGAGAAAAACAGAGTGGGGGTTCAATCTTCAACTGGCTGGCGGGAGCAGCCACTGACAGCCCCACCGCCAGATCAGCCTGCAACTGTCTACTTAACAGTACCTACACAAAAGGATTTAGAAAATGGAACAGCAACCTTCTTGTGTTTAGCCCAGCAGTTTTCACCTAAAAAATATTCGTTTAAGTGGTTTAAGGATGGTCATCAGGTGGCAAATACAATAAACACCTATGACACAAGTGAGAAGAATGGCTCAGTAACCTTATATAGCGCCACAAGCAGTTTGCAAATCAGTGCCGAAGAATGGAAGACAGCCGCCAAAATCAAGTGCGAGTTTGAGCACAAGACGGGAAAAGAAGTCAGAGAGGCCGCATATACAGATAATAATCATGATGACTGCACCAATGTTGCTGCTGTTATAGTCCCCCCGTCCCTTGAAGACATGCTGAAAAATAGAGAAGGAACGCTGACGTGCAAAGCTTCAGGAGCAAATCCAGGATTCACCAAAATAGAGATAAAAGCAAATAATTTTGTCATCGCTGAGGCATCGGAGGCACATTTCAAGAACAAAATAAAGGTGGAGCTTGAAGCCCCTATAGGCTACGAAGAATGGAGCAACGGCACAGTATTTACGTGCACAGTTGAACACACAAAACTACCACAGCCCATGGAGACTACGTTCAAAAGAGAAAATGGTGCGAGACCCAAGAGACCCTCTGTTTACCTGTTAGCACCCCCAGAGCACAAAGAGGGTGAAACGATGACCCTGACATGTTATGTGAAGGATTTCTACCCCAAAGAGGTGTTTGTGTCTTGGCTTGCTGATGATGAACCTGTGATTTTTAAGTCCAAAACTAGCCTGCCAGTGCAGGATGATGAATACTTCTCCGTCTACAGTCAGATCACAGTCAGTTATTCTGAGTGGAAGAGCGGTATAGTGTACAGTTGTGTTGTGTTCCATGAAAGCATTGATGAAAAAATGCGCGTACTGACAAGATCTATTGATGATCATATCGATAAGCCAGGTGTAATTAATCTAAGTATGAATACCCCTGCATCCTGCAAGGACTAGATCGTTATGCATGTGATGTCTTCCTGTTATGCCTGTTAAGTGTTTAACTTGTTCATCTTGTGTTTCTTTTTGTTCTTGAGTTACATGTCCATAATTGTAAGTGTGTTTGTCTTTAATGTTTGTGGCTTCTTGCTTTTTGAGATATTTTCATGCACATAATTTAGGAAAAGACTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313192 lncRNA downstream 149608 4791382 ~ 4792803 (-) False G276071
TU313193 lncRNA downstream 149708 4791382 ~ 4792703 (-) True G276071
TU313236 lncRNA downstream 231449 4704052 ~ 4710962 (-) True G276114
TU313216 lncRNA downstream 238942 4699271 ~ 4703469 (-) True G276094
TU313255 lncRNA downstream 272600 4669332 ~ 4669811 (-) True G276133
TU313229 lncRNA upstream 30716 5004379 ~ 5009473 (-) True G276107
TU313318 lncRNA upstream 85670 5059333 ~ 5059568 (-) True G276193
TU313225 lncRNA upstream 112454 5086117 ~ 5089577 (-) True G276103
TU313200 lncRNA upstream 120455 5094118 ~ 5096986 (-) True G276078
TU313217 lncRNA upstream 164695 5138358 ~ 5152509 (-) True G276095
CI01000069_04932463_04940554.mRNA mRNA downstream 1263 4932144 ~ 4941148 (-) False CI01000069_04932463_04940554
CI01000069_04919538_04930550.mRNA mRNA downstream 11861 4919019 ~ 4930550 (-) True CI01000069_04919538_04930550
CI01000069_04802439_04905601.mRNA mRNA downstream 36525 4801597 ~ 4905886 (-) True CI01000069_04802439_04905601
CI01000069_04692723_04695795.mRNA mRNA downstream 245844 4692492 ~ 4696567 (-) True CI01000069_04692723_04695795
CI01000069_04628032_04638137.mRNA mRNA downstream 304274 4627853 ~ 4638137 (-) True CI01000069_04628032_04638137
CI01000069_04983344_04983640.mRNA mRNA upstream 9659 4983322 ~ 4983640 (-) True CI01000069_04983344_04983640
CI01000069_04985959_04986408.mRNA mRNA upstream 12030 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_04996783_05001227.mRNA mRNA upstream 22677 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_05025745_05032197.mRNA mRNA upstream 51634 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_05042346_05044105.mRNA mRNA upstream 68612 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
TU313201 other downstream 212 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1135334 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1173191 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1366076 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 1516037 3426149 ~ 3426374 (-) True G275755

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051695 False 1454 mRNA 0.39 6 NC_007114.7 33994684 ~ 33997763 (-)